Gene Pnap_2861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2861 
Symbol 
ID4686946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp3002308 
End bp3003408 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content62% 
IMG OID639835868 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_983082 
Protein GI121605753 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.527786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0270955 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGGACA AGAATGCAAA AGACGGCTAT CTGGTTACCG AGAAACTGGT CAAGCGCTTT 
GACGAAGCGC TGGCGGTGGA CGAGGTGTCG CTGTCGGTCG GCCGGGGCGA GATTTTTGCG
CTGCTGGGCA GTTCAGGCTG CGGCAAATCC ACCTTGCTGC GCATGCTGGC AGGCTTCGAA
AAACCCACCT CGGGCCGCAT CCTGCTGGGC GGCCAGGACG TGGCCGGCCT GCAGCCCTAC
GAGCGGCCGA TCAACATGAT GTTCCAGTCC TATGCCCTGT TTCCGCATCT CGACATCTGG
GAAAACATCG CCTTTGGCCT GAAGCGCGAA GGCTTGGCCA AGGCTGAAAT CCAGCAGCGC
GTGGGCGAAA TGCTCGACCT GGTGCAGCTC GGTCCCTATG CCAAACGCAA GCCACACCAG
CTTTCCGGAG GCCAGCAGCA GCGGGTGGCG CTGGCGCGCA GCCTGGCCAA GCGGCCCAAG
CTGCTGCTGC TTGATGAACC GCTGGGTGCG CTGGACAAGA AACTGCGCGA ACAGACCCAG
TTCGAGCTGG TCAACATCAT CGAAAAAGTC GGCGTGACCT GCGTCATGGT GACCCACGAC
CAGGAGGAGG CCATGACCAT GGCTGGCCGC ATCGCGGTCA TGAGCAAGGG CCGGGTGCTG
CAGGTCGGCA CGCCCGAAGA GGTGTATGAG CATCCGGCCA ACCGTTTCGT GGCGGACTTC
ATCGGCAATG TCAATATGTT CGAAGGGCGG CTCAGCGTGG ACGAGCCCGA CCGCTGCGCT
GCCGTCACCG GCATCGGCGA AATCCAGGTG GGCCATGGGG TCAGCGGTAC GCTGAACATG
CCGCTGGCGA TTGCCGTGCG GCCCGAGAAA ATCGAGATCA GCAAGCAGCG GCCGGCAGTT
AGCCGCAATG TCTTTGCCGG CAAGGTCCAG GAAATTGCCT ATTTCGGCTC CTATAACACC
TACATCGTGG TGGCCAGCGA CGGCTCTCGG GTCAGGATCA CCGAAGCCAA CACCTCGCGC
GAAGATATCA GCGGCATCAC CTGGGAAGAC AGCGTCTTTT TCTGGTGGGG CGACCGCGCC
GGTATTGTCC TGCGCGATTA A
 
Protein sequence
MADKNAKDGY LVTEKLVKRF DEALAVDEVS LSVGRGEIFA LLGSSGCGKS TLLRMLAGFE 
KPTSGRILLG GQDVAGLQPY ERPINMMFQS YALFPHLDIW ENIAFGLKRE GLAKAEIQQR
VGEMLDLVQL GPYAKRKPHQ LSGGQQQRVA LARSLAKRPK LLLLDEPLGA LDKKLREQTQ
FELVNIIEKV GVTCVMVTHD QEEAMTMAGR IAVMSKGRVL QVGTPEEVYE HPANRFVADF
IGNVNMFEGR LSVDEPDRCA AVTGIGEIQV GHGVSGTLNM PLAIAVRPEK IEISKQRPAV
SRNVFAGKVQ EIAYFGSYNT YIVVASDGSR VRITEANTSR EDISGITWED SVFFWWGDRA
GIVLRD