| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2812 |
|---|
| Symbol | |
|---|
| ID | 4687650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2956659 |
|---|
| End bp | 2957159 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639835820 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_983035 |
|---|
| Protein GI | 121605706 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.494423 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000324615 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTTC CCGACATGAC CAGGCCGACC GCAGACGCTG TCGAGTCACG GCTGACCTAC
ACCGACGGTG CTTCCCGAAC CGTCTTTGCC ACAGAGGTGG AGGTGCCGTT CCCCGAAGGG
CGCCTGATTG TGTCGCGCAC CGACCTTGAC GGCATCATCA CCCATGCCAA CGACGCCTTC
GTCGAGCTGA GCGGCTGGGT GCGCGATGAG CTGATCGGCA AGCCGCACCA CATCTTGCGC
CACCCCGACA TGCCCAAAGT CGCTTTCAAG GATCTCTGGA ACACGGTTTC GGAAGGCAAG
AAATGGCATG GTTACGTCAA GAACCTGCGC AAGGATGGCT CCTACTACTG GGTCTATGCA
ACGGCTGTCC CCAATATCCG CAATGGGCAA ATTGCAGGCT ACACCTCGGT ACGCCGCAAG
CCTTCGCGCA CACGCATTGA CGAGCTGATT CCGGTGTACC GCCAGTGGCT GGAGCAGGAG
AAGGAAAAAA TCGCATCATG A
|
|---|
| Protein sequence | MRLPDMTRPT ADAVESRLTY TDGASRTVFA TEVEVPFPEG RLIVSRTDLD GIITHANDAF
VELSGWVRDE LIGKPHHILR HPDMPKVAFK DLWNTVSEGK KWHGYVKNLR KDGSYYWVYA
TAVPNIRNGQ IAGYTSVRRK PSRTRIDELI PVYRQWLEQE KEKIAS
|
|---|
| |