| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2796 |
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| Symbol | rpsA |
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| ID | 4687706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 2941847 |
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| End bp | 2943532 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639835804 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_983019 |
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| Protein GI | 121605690 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.355849 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000269522 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTGAAT CTTTTGCCGA CCTGTTTAAC GAATCACTTG AACGCTCTGA AATGCGCTCC
GGTGAAGTCA TCACCGCTGA AGTAGTGCGC ATTGATCACA ACCACGTGGT TGTGAACGCC
GGCCTCAAGT CCGAGGCTTA CATTCCTCTT GAAGAATTCA AGAACGACCA GGGCGAAGTT
GAAGTCCAGG TCGGCGACTT TGTGTCCGTC GCCATCGACT CCGTCGAAAA CGGCTACGGC
GACACCCTGC TCTCGCGTGA CAAGGCCAAG CGCCTGGCAT CGTGGATGAG CCTGGAAAAG
GCCCTGGAAT CCGGCGAATT CGTCACCGGC CAGACCAGCG GCAAGGTCAA GGGCGGCCTG
ACCGTTCTGG TCAACGGCAT CCGCGCTTTC CTGCCCGGCT CGCTGATCGA CACCCGCCCC
ATCAAGGACT TGTCTCCGTA CGAGAACAAG ACCATGGAAT TCAAGGTCAT CAAGCTCGAC
CGCAAGCGCA ACAACGTCGT GTTGTCGCGT CGCGCCGTGG TCGAAGCCAG CATGGGCGAA
GAACGCGCCA AGCTGATGGA AACCCTGAAG GAAGGCTCCG CCGTCAAGGG CATCGTCAAG
AACATCACCG AATACGGTGC ATTCGTTGAC CTGGGCGGCA TTGATGGCTT GCTGCACATC
ACCGACATGG CATGGCGCCG CGTGCGTCAC CCAAGCGAAG TGGTGACGGC TGGCCAGGAA
ATCGTGGCCA AGATCCTGAA GTTCGACACC GAGAAAAACC GCGTGTCGCT GGGTCTGAAG
CAAATGGGTG ACGACCCATG GATGGGCGTG AACCGCCGCT ATCCGCAAAG CACCCGCCTG
TTCGGCAAGA TCACCAACAT TGCCGACTAC GGCGCGTTCG TGGAACTCGA ACCCGGCATC
GAAGGCCTGG TCCACGTGTC CGAGATGGAC TGGACGAACA AGAATGTTGC GCCTAGCAAG
CTCGTGGCCC TGGGCGACGA AGTCGAAGTC ATGGTTCTTG AAATCGACGA AGACAAGCGC
CGCATCAGCC TGGGCATGAA GCAGTGCAAG GCCAATCCAT GGCAGGAATT TGCCGTGGAA
ACCAAGCGCG GCGACCGCGT CAAGGGCCCG ATCAAGTCGA TCACCGACTT CGGCGTGTTT
GTGGGCCTGG CTGCCGGCAT CGACGGCCTG GTGCACTTGT CTGACCTCTC GTGGAACGAG
CCCGGCGAAG CCGCAGTTCG CAACTACAAA AAGGGCCAGG AAGTAGAAGC GATTGTGCTG
GCCGTCGATG TGGACCGCGA GCGTATCTCC CTGGGCATCA AGCAGCTTGA CTCCGATCCG
TTCACCACGT TCGTGTCGAT CAACGACAAG GGCGCGATTG TGACCGGCAA GGTCAAGACG
GTCGATGCCA AGGGCGCCGA AATCGATCTG GGCGAAGACA TCATTGGCTA CCTGCGTGCC
AGCGAAATCA GCCGTGACCG CGTTGAAGAT GCGCGCAATG TGCTGAAAGA AGGCGACGAA
GTGTCGGCTG TCGTGGTGAA CGTGGATCGC AAGACCCGCA ACATCCAGCT GTCGGTCAAA
GCCAAGGACA ACGCCGACCA GCAAGAAGCC ATGGCTTCCC TCAGCCAGCA GTCCTCGCGC
GAAAGCGCCG GCCTGACCAG CCTGGGTGCC CTGCTGCGCG CCAAGCTGGA CAACAGCGAC
AAGTAA
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| Protein sequence | MSESFADLFN ESLERSEMRS GEVITAEVVR IDHNHVVVNA GLKSEAYIPL EEFKNDQGEV
EVQVGDFVSV AIDSVENGYG DTLLSRDKAK RLASWMSLEK ALESGEFVTG QTSGKVKGGL
TVLVNGIRAF LPGSLIDTRP IKDLSPYENK TMEFKVIKLD RKRNNVVLSR RAVVEASMGE
ERAKLMETLK EGSAVKGIVK NITEYGAFVD LGGIDGLLHI TDMAWRRVRH PSEVVTAGQE
IVAKILKFDT EKNRVSLGLK QMGDDPWMGV NRRYPQSTRL FGKITNIADY GAFVELEPGI
EGLVHVSEMD WTNKNVAPSK LVALGDEVEV MVLEIDEDKR RISLGMKQCK ANPWQEFAVE
TKRGDRVKGP IKSITDFGVF VGLAAGIDGL VHLSDLSWNE PGEAAVRNYK KGQEVEAIVL
AVDVDRERIS LGIKQLDSDP FTTFVSINDK GAIVTGKVKT VDAKGAEIDL GEDIIGYLRA
SEISRDRVED ARNVLKEGDE VSAVVVNVDR KTRNIQLSVK AKDNADQQEA MASLSQQSSR
ESAGLTSLGA LLRAKLDNSD K
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