| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2778 |
|---|
| Symbol | |
|---|
| ID | 4687792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2921411 |
|---|
| End bp | 2922508 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639835786 |
|---|
| Product | signal transduction histidine kinase, nitrogen specific, NtrB |
|---|
| Protein accession | YP_983001 |
|---|
| Protein GI | 121605672 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3852] Signal transduction histidine kinase, nitrogen specific |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.549805 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0478149 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGC CATCCATCCC CACTTTTCTG TCTTCCTTCC CGGCTTCTGG AACCATCCGC
TTTCAGGCCT TTGACCTGCT GGCCACGCTG GTCGCGGTGG TCCGCACCAA TGGCTGCGTG
GTGTTTGCCA ATGCCGCGCT CGAAGACGCG CTGGGCACGT CGCGCCGCAC CATCGAAGGC
TCGCAACTGC CTGAATGCTT CACCGAACCC CACATCCTCA AGCATGCGCT GGAGGGGGCG
GGCAGCAATG AATTCGCCGC CCTGCGCTAC GACGCCTGGC TGCGGCGCCT GAACCATGAG
CCGATGCCGG TGCATGTGGT GGTGGCGCAG ACCGACACGC CGGGTGAAGC GATTGTGGAG
ATGCTGCCGC TGGAGCAGCA GGCCAAGCAG GACCGCGAAG AGCGCCTGAT TGACCAGGCG
CAGGCCAATA AGGAACTGAT CCGCAACCTG GCGCACGAGA TCAAGAATCC GCTGGGCGGC
ATTCGCGGCG CGGCACAGCT GCTGCAGATG GAAATCGACA AGGATCTGAC GGAATACACG
CAGGTCATCA TCCATGAGGC CGACCGTCTG CAGACGCTGG TGGATCGCTT GCTGGCGCCG
CACCGCCGGC CGCATCTGGT GGGCGACGTG AACATCCACG AGGTCTGCGA GCGGGTGCGC
TCGCTCATTC TGGCCGAGTT TCCGCGTGGC CTGCGGGTGG TTCGTGACTA TGACACCTCG
ATCCCGGAGT TTCGCGGGGA CCGCGAGCAG CTGATCCAGG CGGTGATCAA TATTGCCCAC
AATGCCGCCC AGGAACTGGC TGAACGCATC GCGGCAGGCA ACGCAAAAAT CACTTTCAAA
ACGCGTATTG CCCGGCAGGT AACTTTTGGA AAGAAGCGCT ATCGCCTGGC ACTGGAATTG
CATGTGATTG ACAATGGGCC GGGTGTACCG GACTCCATCA AAGACCGCAT TTTCTATCCC
CTGGTGTCAG GGCGCGAAGG CGGTTCGGGG CTGGGGCTGA CACTGGCGCA AACCTTTGTC
CAGCAACACC ACGGCTTGAT TGAGTGCGAG AGCCGGCCTG GCCATACAGA CTTCAAGCTG
CTGATACCGC TGCCCTGA
|
|---|
| Protein sequence | MKKPSIPTFL SSFPASGTIR FQAFDLLATL VAVVRTNGCV VFANAALEDA LGTSRRTIEG
SQLPECFTEP HILKHALEGA GSNEFAALRY DAWLRRLNHE PMPVHVVVAQ TDTPGEAIVE
MLPLEQQAKQ DREERLIDQA QANKELIRNL AHEIKNPLGG IRGAAQLLQM EIDKDLTEYT
QVIIHEADRL QTLVDRLLAP HRRPHLVGDV NIHEVCERVR SLILAEFPRG LRVVRDYDTS
IPEFRGDREQ LIQAVINIAH NAAQELAERI AAGNAKITFK TRIARQVTFG KKRYRLALEL
HVIDNGPGVP DSIKDRIFYP LVSGREGGSG LGLTLAQTFV QQHHGLIECE SRPGHTDFKL
LIPLP
|
|---|
| |