| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2712 |
|---|
| Symbol | |
|---|
| ID | 4689074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2859808 |
|---|
| End bp | 2860668 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639835720 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_982935 |
|---|
| Protein GI | 121605606 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000174886 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.399546 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGAAC CCCGGAATGC AGCGCACCCT GCGCCTGTCA CCCCCAACCC AGCGGCAGCG
GTGGCCATCG TCACCGGCGC GGCCGACGGC ATCGGCTGGG CCACGGCGCA GCGGCTGGCG
GCCGACGGCC TGCGCGTGGC GCTGCTCGAC CTGCGCGCCG ACGCAGCCCA AGCCCGCGCC
GCCGAACTTG GAAGCATCCA CCTGGGACTC GGCTGCGACG TGACCTCGGA AGAAAGCGTG
GAAGCCGCCG TGGCTGCCGT GCTGGAACGC TTTGGCCGCA TCGACGCGCT GGTCAACAAC
GCCGGCATCG GCGACCAGAC CGGCCCAACG ACCGAACAAA GCGTGCAGGC CTTCGACCGC
GTGCTGGCCG TGCATCTGCG CGGAACCTTT CTCATGAGCC GCGCCGTCGC CAGGCACATG
CTGCAAGCCG CGCCCGTGCC GGGCCGGGGC CGTGGCGCCA TCGTCAACCT GGGCTCGATT
GCCAGCAGCA CCGGCCTGCC GGCGCGCAAT GCCTACAGCG CGGGCAAGGC CGGCGTGCTG
GGCATGACCC GCGCCATGGC CAGCGAATGG GCGCGCGCGG GCATCCGCGT CAACGCCGTG
GCGCCCGGCT ATGTGCGCAC CGCGCTGGTC GCCGAGCTGG AGCGCAAGGG CGCGATTGAC
GCCGCAGCCA TCCGCCGCCG CACGCCGCTG GGCCGCATGG CCGAGCCCGC CGAGATTGCC
GAGGTGATTG CCTTTTTGGC CAGCGACCGC GCCAGCTATG TGACCGGCGC ATTGATTCCG
GTCGATGGCG GCTGGACGGC TTTCGGCGCG ACCGAAAGCG CTCTGCCCGA ACTGGCTGAG
CTGGCGGACG AGCTGGCCTG A
|
|---|
| Protein sequence | MPEPRNAAHP APVTPNPAAA VAIVTGAADG IGWATAQRLA ADGLRVALLD LRADAAQARA
AELGSIHLGL GCDVTSEESV EAAVAAVLER FGRIDALVNN AGIGDQTGPT TEQSVQAFDR
VLAVHLRGTF LMSRAVARHM LQAAPVPGRG RGAIVNLGSI ASSTGLPARN AYSAGKAGVL
GMTRAMASEW ARAGIRVNAV APGYVRTALV AELERKGAID AAAIRRRTPL GRMAEPAEIA
EVIAFLASDR ASYVTGALIP VDGGWTAFGA TESALPELAE LADELA
|
|---|
| |