Gene Pnap_2536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_2536 
Symbol 
ID4690206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp2673124 
End bp2673738 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content52% 
IMG OID639835543 
Productpolyhydroxyalkonate synthesis repressor, PhaR 
Protein accessionYP_982760 
Protein GI121605431 
COG category[S] Function unknown 
COG ID[COG5394] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR01848] polyhydroxyalkanoate synthesis repressor PhaR 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.137211 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.503574 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAAAGTA ATAAATCCAT TCAATCGCCC TCAGGCGAGC CTTCCGTGGC CGGTAGTCTT 
TCTCCAGAAG AAATTTCTGT CCATAACGCC AGCAAGGCTG CTGACAAGAC TGAGGCGACG
CGGATCATCA AGAAATACCC AAATCGGCGT CTCTACGATA CTGAAACTTC GGCTTACATC
ACCTTGGCCG AAGTTAGGCG CCTGGTGATG AGCAGTACGC AGTTTGTCGT GCGTGACGCC
AAAACCAATG AAGACCTCAC GCGCAGCATC CTGCTTCAGA TCATTCTTGA AGAGGAGGCC
GGTGGCGCGC CCATGTTTAC CGAGGCCGTG CTGGCCAACA TCATCCGTTT CTACGGCGAT
GCAATGCAGA GCTTCATGGG TGCATACCTT GAGAAAAATG TCCAGAGTTT CATGGACTTG
CAGCTCAAGA TGGCCGAGCA GTCCAAAGGG ATGAGTCCCG AGATGTGGGC GCAGTTCATG
AATGCAAAGT CGCCCATGAT GCAAGGCATG ATGGGGGCTT ATGTCGAGCA ATCCAAGAAT
GTCTTTACGC AGATGCAGGA GCAGATGCAA AAGCAGAGCG AGCAAATGCT GTCAGCACTG
GGGCTGAAGC GTTAA
 
Protein sequence
MQSNKSIQSP SGEPSVAGSL SPEEISVHNA SKAADKTEAT RIIKKYPNRR LYDTETSAYI 
TLAEVRRLVM SSTQFVVRDA KTNEDLTRSI LLQIILEEEA GGAPMFTEAV LANIIRFYGD
AMQSFMGAYL EKNVQSFMDL QLKMAEQSKG MSPEMWAQFM NAKSPMMQGM MGAYVEQSKN
VFTQMQEQMQ KQSEQMLSAL GLKR