Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2420 |
Symbol | |
ID | 4687537 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 2555781 |
End bp | 2556803 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 639835430 |
Product | aliphatic sulfonate ABC transporter periplasmic ligand-binding protein |
Protein accession | YP_982648 |
Protein GI | 121605319 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.311787 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTCAT CCATCACCGC CCCGCCTGAC CTGGCGCCGC CGCCGCCGCC GATTCGGCAA AGCCTGCGCG ACCTGCTCGC CAGTGTCCTG CTGGTCGCTA CCCTGGCACT GGCCACCAGC CTTTTGGCGC TGCCGAAAGC GCACGCCCAG GACAATGTCG AACTGCGCAT CGGCTACCAG AAATCGGCCA GCCTGTTTGT GCTGCAAAAA GCCCAGGGCA CGCTGGAAAA GCGTCTGGCG CCGCTGCATG CCTCCGTCAA ATGGGTGGAG TTTCCGGCCG GCCCGCAACT GCTTGAAGGC CTGAACCTGG GCTCTGTCGA TGTCGGCTAC GTGGGCGAGG CGCCGCCGAT TTTCGCGCAG GCCGCCGGCG CCAGGTTCGC CTATATCGGC TACGACCCGG CCGCGCCTGA AGCCGAAGCC CTCCTGGTGC CCAAAACTTC CGCCATCAAG TCCGTGGCTG AGCTGAAAGG CAAAAAAGTC GCTTTGAACA AGGGCAGCAA CGTGCATTAC CTGCTGGTCA AACTGCTGGA GAAAAACGGC CTCAAGCTCA GCGATGTTCA GCCGATCTAC CTGGCGCCTG CCGACGCGCG GGCGGCCTTT GAAAGCGGCA GCGTCGATGC CTGGGTGATC TGGGATCCGT TTGCCGCAGC CGCTGAAAAA GCCATAGGCG CCCGGGTGCT GGCCAACGGC AAGGGCGTGG TCAACAACTA TGCCTACTAC CTGGCCGAAC GCAATTTCGC CGCCAAAAAC CCCAAGGTCA TCCAGGCGCT GTTTGACGAC TCGGTGGAGC GGGGCGCCTG GCTCAAGGCC AATGTGCGCA AGGCGGCCGA ACAGATCGCG CCGCTGCAGG GCCTGCCGGT CGAGGTCGTC GAACTCAGCC TGCACCGCTA TGAATTCAAG GTCAAGCCGG TGCCCGACAG CGTCATTGCC GACCAGCAAA AGCTCGCCGA CACCTTCTTT GACCTCAAGC TGATCCCCAA AGCCATCGCG GTGCGCGACG CCGCCTACCA GGCCGCGCCC TGA
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Protein sequence | MTSSITAPPD LAPPPPPIRQ SLRDLLASVL LVATLALATS LLALPKAHAQ DNVELRIGYQ KSASLFVLQK AQGTLEKRLA PLHASVKWVE FPAGPQLLEG LNLGSVDVGY VGEAPPIFAQ AAGARFAYIG YDPAAPEAEA LLVPKTSAIK SVAELKGKKV ALNKGSNVHY LLVKLLEKNG LKLSDVQPIY LAPADARAAF ESGSVDAWVI WDPFAAAAEK AIGARVLANG KGVVNNYAYY LAERNFAAKN PKVIQALFDD SVERGAWLKA NVRKAAEQIA PLQGLPVEVV ELSLHRYEFK VKPVPDSVIA DQQKLADTFF DLKLIPKAIA VRDAAYQAAP
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