| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2065 |
|---|
| Symbol | |
|---|
| ID | 4689371 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 2193229 |
|---|
| End bp | 2195289 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639835076 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_982295 |
|---|
| Protein GI | 121604966 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.56119 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTACCTA TCCTCCAGCG CGCCGCCGCG TTTGCCACTG TGCAGTTTCA CCGCCTCATC
GGCCTCATCA AACGCTATCC GCTCCGGGCC GCCTTCGTGC TTCCGGCGCT GGTGCTGCTG
TACGTGCTGC TGATGATTCC CTTCACGCCC GGCATCGGCG ACCTGCGCAA GGCCAAGTCC
GAGGTGCCGT CGGTGCTGCT GGCGTCCAAC GGCACGGTGC TGGCCGAGTA CAAGCGCATC
AACCGCCGCT GGGTCACGCT GGACAAGATC TCGCCGCATG TCGTCAACGC GCTGATTTCG
ACCGAAGACC ACCGCTTCTA CCAGCACCAT GGCATCGACT TTCGCCGCAC CGCCGGCGCC
ATGCTGAGCA CGCTGACCGG CGACCTGCAG GGCGGCTCGA CCATCACGCA GCAGCTGGCG
CGCAACATGT ACCCCGAGGA AATCGGCCGC TCGGCCACCA TTTCGCGCAA GGTCAAGGAG
GCCATCACCG CGCTGAAGAT CGAGGCGGTG TATTCCAAGG ACGAGATCCT GGAAACCTAC
CTCAACACCG TGCCGTTTCT CTACAACGCC TTCGGCATCG AGATGGCGGC GCAGACCTAT
TTCGACAAGT CCGCCGACCG GCTCGACGTG CTGGAAAGCG CCACGCTGAT CGGCATGCTC
AAGGGCACGA GCTACTACAA CCCGGTGCTC AATCCGGCGC GCGCCAAGGA GCGCCGCAAC
CTGGTGCTGG CGCAGATGGC CAAGCGCGGC AAGCTGGAGC CGTCCCGGCT GGATGCGCTG
TCCAAGCGGC CCTTGCGGCT GGATTTCGAG CGCCAGGTCG AGCCGCTGGG CGCCGCGCCG
CACGTCGCCC AGCACCTGCG CAAATGGCTG ATCACCTGGG CCGACAGCAA GGGCTACAAC
ATTCATTCCG ACGGCCTGCG GGTGCGCACC ACGCTGGACG CCAACATCCA GAAGCTGGCC
AACCAGGCCG TGGCGCGGCA GATGGCGCAG CTGCAAAAGC TGGCCGACGG CCAGCGCAAG
GCCGGGCAGG AGCGCGCCGC GCTGCAGGTC GGCTTCCTGG CGGTGGACCC GCGCAACGGC
GCCGTGCGCG CCTGGGTGGG CAGCCGCGAT TTTGCCCACG AGCAGTTCGA CCATGTGAGC
CAGGCGCGCC GCCAGCCGGG CTCGACCTTC AAGCCCTTCG TGTATGGCGC GGCCTTCATG
CAGGGGCTGA GCCCGTCGTT CGCCCTGGTT GACCAGCCGG TCGCCATTTC ATCCGGGGGC
GGCGACGTGT GGACGCCCAC GGATGCCACG CCGCCCACCG GCCTGCCGAC CACCTTGCGC
GACGGCCTGG TGTATTCCAA GAACACCATC ACTGCCCAAC TGATGCAACA GGTCGGCCCG
GCCAAGGTCG GGCAATTGGC AAAAGCCATG GGAATCCGGC AGAGCAAGCT CGACCTGGTG
CCTTCGCTGG CGCTGGGCAC CAGCCCGGTC ACGCTGCTGG AGATGGTCGC GGCCTACGGC
ACGATTGCCA ACGGCGGGCG CTACATGCTG CCGGTGCTGG TGGCGCAGGT CGAAGACCAC
CAGGGCAACA TCCTCGAGAA ATTTGCCGCC GTCACCGAGC CTGAGCCGGC GATGCCGCGC
GCCGACTCGC TGACGCTGGT CGATGTGATG CGCGGCGTCA TCGACCAGGG CACCGGCATT
GCCATTCGCC AGCGCTACGG CATCCAGGCC GACGTGGCCG GCAAGACCGG CACCACGCAG
GACAACACTG ACGGCTGGTT CATCATGATG AACCCGCAAC TGGTGGCCGG CGCCCGGGTC
GGCTTCAACG ACAACAGCGT GACGATGGGC AACTGGGGGC AGGGCGCCCG CAGCGCGCTG
CCCATCGTCG GGGAGGTTTT CCAGGGGGCG TTTCGCAACC GCTGGCTCGA CGAGCGCGCC
GAGTTCGACA TTCCGCGCAC CCGCTACGAG CCGGCTCCGC CACCGCCCGA GGAGCAGCAG
CAGCGCCAGC AGCGGCGCAA TGATCCGCTG TCGAACATCG TCAACGGGCT GTTCGGCAGG
ATTCTGAGGC AACTGCAATA A
|
|---|
| Protein sequence | MLPILQRAAA FATVQFHRLI GLIKRYPLRA AFVLPALVLL YVLLMIPFTP GIGDLRKAKS
EVPSVLLASN GTVLAEYKRI NRRWVTLDKI SPHVVNALIS TEDHRFYQHH GIDFRRTAGA
MLSTLTGDLQ GGSTITQQLA RNMYPEEIGR SATISRKVKE AITALKIEAV YSKDEILETY
LNTVPFLYNA FGIEMAAQTY FDKSADRLDV LESATLIGML KGTSYYNPVL NPARAKERRN
LVLAQMAKRG KLEPSRLDAL SKRPLRLDFE RQVEPLGAAP HVAQHLRKWL ITWADSKGYN
IHSDGLRVRT TLDANIQKLA NQAVARQMAQ LQKLADGQRK AGQERAALQV GFLAVDPRNG
AVRAWVGSRD FAHEQFDHVS QARRQPGSTF KPFVYGAAFM QGLSPSFALV DQPVAISSGG
GDVWTPTDAT PPTGLPTTLR DGLVYSKNTI TAQLMQQVGP AKVGQLAKAM GIRQSKLDLV
PSLALGTSPV TLLEMVAAYG TIANGGRYML PVLVAQVEDH QGNILEKFAA VTEPEPAMPR
ADSLTLVDVM RGVIDQGTGI AIRQRYGIQA DVAGKTGTTQ DNTDGWFIMM NPQLVAGARV
GFNDNSVTMG NWGQGARSAL PIVGEVFQGA FRNRWLDERA EFDIPRTRYE PAPPPPEEQQ
QRQQRRNDPL SNIVNGLFGR ILRQLQ
|
|---|
| |