Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_2020 |
Symbol | |
ID | 4689434 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | - |
Start bp | 2147972 |
End bp | 2150305 |
Gene Length | 2334 bp |
Protein Length | 777 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 639835028 |
Product | lysine decarboxylase |
Protein accession | YP_982250 |
Protein GI | 121604921 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.605875 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCTCCG ACAGGTTCTG GGCACCCTCA ACTGCTGCAT ACGCCATGAA ATTTCGCTTT CCGATTGTCA TCATCGACGA GGACTTCCGT TCTGAAAACA CCTCGGGACT GGGCATACGC GCACTCGCCC AGGCCATAGA AAGCGAAGGC TTCGAGGTGC TGGGCGTCAC CAGCTACGGT GACTTGTCGC AGTTCGCGCA GCAGCAAAGC CGTGCCAGCG CCTTTATTTT GTCGATTGAC GATGAAGAGT TCACGCCCGG TCCCGATCTG GACCCGGCCG TGCTCGACCT GCGCAACTTC ATTGCCGAGG TGCGCCGAAA AAACCTGGAC GTGCCGATTT ACGTTTATGG CGAGACCAAG ACCTCGCGCC ATATCCCGAA CGACATCCTG CGCGAGCTGC ACGGCTTCAT CCACATGTTC GAGGACACGC CCGAGTTCGT GGCGCGCCAC ATCATCCGCG AGGCCAAAAG CTACCTCGAA GGCGTGCAGC CGCCGTTTTT CAAGGCGCTG CTGGACTACG CCGAGGACGG CTCCTATTCA TGGCATTGCC CCGGCCATTC CGGCGGCGTT GCTTTCCTGA AAAGCCCGGT CGGGCAGATG TACCACCAGT TCTACGGCGA GAACATGCTG CGCTCGGACG TCTGCAACGC GGTGGAAGAG CTGGGCCAAC TGCTCGACCA CAACGGCGCC ATCGGCGCCA GCGAGCGCAA TGCGGCGCGC ATCTTCAATG CCGACCATTG CTTTTTCGTG ACCAACGGCA CGTCAACGTC CAACAAGATG GTCTGGCACC ATACCGTGGC GCCGGGCGAC GTGGTGGTGG TGGACCGCAA CTGCCATAAA TCGATCCTGC ACGCCATCAT CATGACCGGC TCGATCCCGG TGTTCCTCAA GCCCACGCGC AACCATTTCG GCATCATCGG CCCGATTCCG CAAAGCGAAT TCGAGCCCGA GGCGATTCGC GCCAAGATTG CCGCCAACCC CTTGCTCAAG GGCGTTGATG CCGCCACCGT CAAGCCACGC GTGCTGACGC TGACCCAATC GACCTACGAC GGCGTGCTCT ACAACACCGA GACCATCAAG GGCATGCTCG ACGGCTACAT CGACAACCTG CACTTTGACG AAGCCTGGCT GCCGCACGCC GCTTTCCACC CGTTCTACGG CACCTACCAC TCGATGGGCA AGAACCGCAT CCGGCCGAAA AACGCCGTGG TGTACGCCAC GCAGTCGATC CACAAGCTGC TGGCCGGCAT CAGCCAGGCC AGCCATGTCT TGGTGCAGGA TTCGCAGAAC GTCAAGCTCG ACAGGCACCT GTTCAACGAG GCCTACCTGA TGCACACCTC GACCTCGCCG CAGTACAGCA TCATTGCCAG CTGCGACGTG GCCGCCGCCA TGATGGAGCC GCCCGGCGGC ACCGCGCTGG TCGAGGAAAG CATTGCCGAG GCGCTCGATT TCCGCCGCGC CATGCGCAAG ATCGATGAGG AATATGGCGC GGACTGGTGG TTCAAGGTCT GGGGGCCGGA CAAGCTGGTG GAGGAAGGCA TTGGCCGTGC CCAGGACTGG ATCATCAAGG GCGAGTCGCG CAGCGCCAAG ACCGCAAAGA ACGGCGCGGC CAACTGGCAC GGCTTTGGCC AGATGGCCAC CGGCTTCAAC ATGCTGGACC CGATCAAATC GACCATCGTC ACGCCGGGGC TGGACCTGAA CGGCAAGTTT GCCAAGACCG GCATTCCGGC CAGCATCGTG ACCAAGTTCC TGGCCGAGCA TGGCGTGATT GTGGAAAAGA CCGGCCTGTA CAGCTTTTTC ATCCTGTTCA CCATCGGCAT CACCAAGGGC CGCTGGAACA CGCTGCTGAC CGCGCTGCAG CAGTTCAAGG ACGACTACGA CAAGAACCAG CCGATGTGGC GCATCCTGCC CGAGTTCTGC CAGAAGTTCC CGAAGTACGA GCGCATGGGG CTGGCCGACC TGTGCCAGCA TATTCATGCC CTGTATGCCA AGTACGACAT TGCACGGCTG ACGACTGAGG TGTACCTGAG CGACCTGATG CCGGCCATGA AGCCGAGCGA CGCCTACGCC CACATTGCCC ATCGCACGAC CGAGCGGGTG GAAATCGACC ATCTGGAAGG CCGGATCACC GTCGGGCTGG TGACACCTTA CCCGCCGGGT ATTCCGCTCC TGATTCCCGG TGAAGTGTTT AACAAGAAAA TCGTCGATTA CCTGAAGTTT TCCCGCGAAT TCAATGCGCA GTGCCCGGGT TTCGAGACTG ACATTCATGG TCTGGTCGAG CAGGCCGATG CGAAGGGAAA AGTCCGCTAC TACGCCGACT GCGTGAAGAA ATAA
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Protein sequence | MPSDRFWAPS TAAYAMKFRF PIVIIDEDFR SENTSGLGIR ALAQAIESEG FEVLGVTSYG DLSQFAQQQS RASAFILSID DEEFTPGPDL DPAVLDLRNF IAEVRRKNLD VPIYVYGETK TSRHIPNDIL RELHGFIHMF EDTPEFVARH IIREAKSYLE GVQPPFFKAL LDYAEDGSYS WHCPGHSGGV AFLKSPVGQM YHQFYGENML RSDVCNAVEE LGQLLDHNGA IGASERNAAR IFNADHCFFV TNGTSTSNKM VWHHTVAPGD VVVVDRNCHK SILHAIIMTG SIPVFLKPTR NHFGIIGPIP QSEFEPEAIR AKIAANPLLK GVDAATVKPR VLTLTQSTYD GVLYNTETIK GMLDGYIDNL HFDEAWLPHA AFHPFYGTYH SMGKNRIRPK NAVVYATQSI HKLLAGISQA SHVLVQDSQN VKLDRHLFNE AYLMHTSTSP QYSIIASCDV AAAMMEPPGG TALVEESIAE ALDFRRAMRK IDEEYGADWW FKVWGPDKLV EEGIGRAQDW IIKGESRSAK TAKNGAANWH GFGQMATGFN MLDPIKSTIV TPGLDLNGKF AKTGIPASIV TKFLAEHGVI VEKTGLYSFF ILFTIGITKG RWNTLLTALQ QFKDDYDKNQ PMWRILPEFC QKFPKYERMG LADLCQHIHA LYAKYDIARL TTEVYLSDLM PAMKPSDAYA HIAHRTTERV EIDHLEGRIT VGLVTPYPPG IPLLIPGEVF NKKIVDYLKF SREFNAQCPG FETDIHGLVE QADAKGKVRY YADCVKK
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