| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_2012 |
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| Symbol | |
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| ID | 4689359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 2138112 |
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| End bp | 2139632 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 639835020 |
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| Product | NusA antitermination factor |
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| Protein accession | YP_982242 |
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| Protein GI | 121604913 |
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| COG category | [K] Transcription |
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| COG ID | [COG0195] Transcription elongation factor |
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| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000880424 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.51664 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCGCG AACTGTTGAT GTTGGTTGAT GCCATCTCGC GTGAAAAAAA CGTTGAACGC
GACGTCGTCT TTGGCGCCGT CGAGCTTGCG CTCGCCTCTG CCACCAAGAA AGTGTATGCC
GATGGCGTGG ACATCCGTGT TGCGGTTGAC CGTGACAGCG GAAATTACGA AACCTTCCGC
CGCTGGCTGG TGGTTGCTGA CGAGGCTGGT CTGCAAAATC CCGAAGCCGA AGAGCTGGTG
ACCGATGCGC GCGACGAAAT CCCCGACATT GAAGAGGGCG ACTACATCGA AAAGCCGGTC
GAAAGCCTGC CGATTGGCCG CATTGGCGCG CAGGCGGCCA AGCAGGTCAT CCTGCAAAAA
ATCCGCGACG CCGAGCGCGA AATGCTGCTC AACGACTTCA TGTCGCGCGG TGACAAGATT
TTTGTCGGCA CCGTCAAGCG CATGGACAAG GGCGACCTGA TCGTCGAATC CGGCCGCGTC
GAGGGCCGTC TGCGCCGCAG CGACATGATT CCGAAAGAAA ACCTGCGCAC TGGCGACCGT
GTCCGCGCCA TGATCATGGA AGTCGATACC ACGCTGCGTG GCGCTCCCAT CATCCTGTCA
CGCACTTCGC CCGAGTACAT GATCGAGCTG TTCCGCCAGG AAGTCCCTGA AATCGAGCAG
GGCCTGCTTG AAATCAAGAC CTGCGCGCGC GACCCCGGCT CACGCGCCAA GATCGCCGTG
CTGTCGCATG ACAAGCGTGT CGATCCGATT GGCACCTGCG TCGGCGTTCG CGGCACCCGC
GTCAATGGCG TGACCAACGA GTTGGCTGGC GAACGCGTCG ATATCGTGCT GTGGAGCGAA
GACCCGGCCC AGTTCGTGAT CGGTGCGCTG GCGCCCGCCA ATGTGTCGTC CATCGTGGTC
GATGAAGAGC GTCACGCGAT GGACGTGGTG GTGGATGAGG AAAACCTCGC CATCGCCATT
GGCCGTGGCG GCCAGAACGT GCGCCTGGCG TCCGAGCTGA CCGGCTGGAA GATCAACATC
ATGGATGCCA ACGAGTCCGC CCAGAAGCAG GCCACCGAAA CCGACAGCAG CCGCAAGCTG
TTCATGGCCA AGCTCGATGT GGACCAGGAA ATCGCCGACA TCCTGATTGC CGAGGGCTTT
ACCAGCCTGG AAGAAGTGGC CTATGTGCCG CTGCAGGAAA TGCTCGAAAT CGAATCTTTC
GATGAAGATA CCGTCAACGA GCTGCGCACA CGCGCCAAAG ACGCTCTTTT GACCATGGAA
ATCGCCCAGG AAGAAAATGT CGGCGGTGTT TCGCAGAATC TGCGCGACGT TGAAGGCTTG
ACGCCCGAGT TGATTGCCAA ATTGACCGAA GCGGGTGTTG CCACCCGCGA CGACCTGGCC
GATCTGGCCG TGGATGAGCT TACCGATATA ACCGGCCAGT CTGCGGACGA GGCCAAAGCC
CTGATCATGA CTGCACGCGC CCATTGGTTT ACCGATGGCG CTGGCGACGC TGCTGCACCC
GCAGCAGCCC AAGAGCAGTG A
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| Protein sequence | MNRELLMLVD AISREKNVER DVVFGAVELA LASATKKVYA DGVDIRVAVD RDSGNYETFR
RWLVVADEAG LQNPEAEELV TDARDEIPDI EEGDYIEKPV ESLPIGRIGA QAAKQVILQK
IRDAEREMLL NDFMSRGDKI FVGTVKRMDK GDLIVESGRV EGRLRRSDMI PKENLRTGDR
VRAMIMEVDT TLRGAPIILS RTSPEYMIEL FRQEVPEIEQ GLLEIKTCAR DPGSRAKIAV
LSHDKRVDPI GTCVGVRGTR VNGVTNELAG ERVDIVLWSE DPAQFVIGAL APANVSSIVV
DEERHAMDVV VDEENLAIAI GRGGQNVRLA SELTGWKINI MDANESAQKQ ATETDSSRKL
FMAKLDVDQE IADILIAEGF TSLEEVAYVP LQEMLEIESF DEDTVNELRT RAKDALLTME
IAQEENVGGV SQNLRDVEGL TPELIAKLTE AGVATRDDLA DLAVDELTDI TGQSADEAKA
LIMTARAHWF TDGAGDAAAP AAAQEQ
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