| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1897 |
|---|
| Symbol | |
|---|
| ID | 4689454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 2018240 |
|---|
| End bp | 2020624 |
|---|
| Gene Length | 2385 bp |
|---|
| Protein Length | 794 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639834904 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_982128 |
|---|
| Protein GI | 121604799 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1032] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.752048 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCC CAGTTGACGT CTCCTTTTTT ACCCGCGCCG CCAAGCCGCT GACCAGTTAC
CGCAAATACT GGGCTGCCCG CTTCGGCACC GCCAAATTCC TGCCCACCAG CCGGGCCGAG
ATGGAGGCGC TGGGCTGGGA CAGCTGCGAC ATCATCCTGG TTACCGGCGA CGCCTATGTC
GATCACCCGA GCTTCGGCAT GGCGGTGATT GGCCGGGTGT TAGAGGCGCA GGGCTTTCGC
GTCGGCATCA TCGCCCAGCC CGACTGGCAC AGCGCCGAGG CCTTCAAGGC GCTGGGCAAG
CCCAACCTGT TCTGGGGCGT GACCGCCGGC AACATGGACT CGATGATCAA CCGCTACACG
GCAGACCGCA AAATCCGCAG CGACGACGCC TACACCCCCG GCGACATCGG CGGCAAGCGG
CCCGACCGCG CGGCCATCGT GTACAGCCAG CGCTGCCGCG AAGCCTATAA AGACGTGCCG
ATCATCCTCG GCGGCATCGA AGGCAGCCTG CGCCGCATCG CGCATTACGA CTACTGGAGC
GACAAGGTGC GCCGCTCCAT CGTCGTCGAT GCCAAGAGTG ATTTGCTGCT CTACGGCAAC
GCCGAGCGCG CGCTGGTCGA GATTGCCCAC CGCCTGGCCG CGCGCGAACC CGTGCAGAGC
ATCACCGACG TGCGCGGCAC GGCCTTCGTG CGCCGCCAGG ACGACGAGAC GGGCCGGGGC
TGGTTCGAGA TCGACTCCAC GCAGGTCGAT GAGCCGGGCC GGGTCGAGTC GCACATCAAC
CCCTACATGA CCACCAGCGA GCAGGCGGCC GGGCAGGGCA GCACTTGCGC CAAGGAAGAC
GGCGAGAAGG CAGCTACTGA AACAATAGCT GCTGGCGCAC TGCCAGCAAG CGCTACAGGC
CAATCAGCCT TGAAAAACGA GGTCAACCAG GCGATCAGGC CGCTGACGTT CTTCCCGAAT
CCCGCTTTGT ACGGAAAAGG CAGCGTCAAG GTTCCGCCGC GCGACCGTAC CGTGATTCGC
CTGCCGAGCT ACGAGCAGAT CAAGGCCGAC CCGGTGCTCT ACGCCCACGC CAACCGCGTG
CTGCACCTGG AAACCAACCC CGGCAACGCC CGGGCGCTGG TGCAGGCGCA CGGCGAAGGC
ACGACCGCGC GCGATGTCTG GATCACGCCG CCGCCCATCC CGCTGACCAC GGCCGAGATG
GACTACGTGT TCGACTTGCC CTACGCACGC GGCCCGCACC CGAGCTACGC CGACGAAAAC
GGCCGCCATG ACGGCGCGAC CAAGATTCCG GCCTGGGAGA TGATCCGGTT TTCGATCAAC
ATCATGCGCG GCTGCTTCGG TGGCTGCACC TTCTGCTCGA TCACCGAGCA CGAAGGCCGC
ATCATCCAGA GCCGCTCCGA GGATTCGGTG ATCCGCGAGA TCGAGGACAT CCGCGACAAG
GTCGAAGGCT TCACCGGCAC CATTTCCGAC CTGGGCGGCC CCACGGCCAA CATGTACCGC
CTCGGCTGCA AGAGCCCGGA AATCGAAGCG GCCTGCCGCA AGCCGAGCTG CGTCTATCCC
GGCATCTGCC AGAACCTGAC CACCGACCAC GGCCCGCTGA TCAAGATCTA CAAGCGCGGC
CGCGCGCTCA GGGGCATCAA GAAAATCCTG ATCGGCTCGG GCCTGCGCTA CGACCTGGCC
GTGAAAAGCC CCGAGTACGT GAAGGAACTG GTCACACACC ACGTCGGCGG CTACCTCAAA
ATCGCGCCCG AGCACACCGA GCAGGGGCCG CTGACCAAGA TGATGAAGCC CGGCATCGGC
AGCTACGACA AGTTCAAGAC GCTGTTCGAG AAGTTCAGTT TAGAGGCCGG CAAGAAGCAG
TTCCTGATTC CTTACTTCAT CGCCGCCCAC CCCGGCACCA GCGACGAAGA CATGATGAAC
CTGGCGATCT GGCTGAAGAA GAATGGTTTC CGCGCCGACC AGGTGCAGAC CTTCTACCCC
AGCCCGATGG CCACGGCCAC GGCGATGTAC CACAGCAACA AGAACCCGCT GCGCCGGATC
ACCCGCGACA GCGAGACGGT GGACATCGTG CGCGGCGACA AGCGCCGCCG CCTGCACAAA
GCCTTCCTGC GCTACCACGA CGCCAACAAC TGGCCGCTGC TGCGCGAAGC GCTCAAGACC
ATGGGCCGCG CCGACCTGAT CGGCAACGGC AAGCACCACC TGATTCCGAC CTTCCAGCCG
ATGACCGATG GCACTTACAC CAGTGCGCGG CGCAAGAACT CGACGGCCTC CGTGACCCCG
GCTGTGCCCG TCAAGGGCCG GATGCTAACG CAGCACACCG GGCTGCCGCC ACGGGACAAT
GGTTCGGGCA AGGTGCCGGG CAAGCTGGCG CGCAAGCCGC GCTGA
|
|---|
| Protein sequence | MNAPVDVSFF TRAAKPLTSY RKYWAARFGT AKFLPTSRAE MEALGWDSCD IILVTGDAYV
DHPSFGMAVI GRVLEAQGFR VGIIAQPDWH SAEAFKALGK PNLFWGVTAG NMDSMINRYT
ADRKIRSDDA YTPGDIGGKR PDRAAIVYSQ RCREAYKDVP IILGGIEGSL RRIAHYDYWS
DKVRRSIVVD AKSDLLLYGN AERALVEIAH RLAAREPVQS ITDVRGTAFV RRQDDETGRG
WFEIDSTQVD EPGRVESHIN PYMTTSEQAA GQGSTCAKED GEKAATETIA AGALPASATG
QSALKNEVNQ AIRPLTFFPN PALYGKGSVK VPPRDRTVIR LPSYEQIKAD PVLYAHANRV
LHLETNPGNA RALVQAHGEG TTARDVWITP PPIPLTTAEM DYVFDLPYAR GPHPSYADEN
GRHDGATKIP AWEMIRFSIN IMRGCFGGCT FCSITEHEGR IIQSRSEDSV IREIEDIRDK
VEGFTGTISD LGGPTANMYR LGCKSPEIEA ACRKPSCVYP GICQNLTTDH GPLIKIYKRG
RALRGIKKIL IGSGLRYDLA VKSPEYVKEL VTHHVGGYLK IAPEHTEQGP LTKMMKPGIG
SYDKFKTLFE KFSLEAGKKQ FLIPYFIAAH PGTSDEDMMN LAIWLKKNGF RADQVQTFYP
SPMATATAMY HSNKNPLRRI TRDSETVDIV RGDKRRRLHK AFLRYHDANN WPLLREALKT
MGRADLIGNG KHHLIPTFQP MTDGTYTSAR RKNSTASVTP AVPVKGRMLT QHTGLPPRDN
GSGKVPGKLA RKPR
|
|---|
| |