| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1816 |
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| Symbol | |
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| ID | 4689447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 1931896 |
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| End bp | 1934019 |
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| Gene Length | 2124 bp |
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| Protein Length | 707 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639834822 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_982047 |
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| Protein GI | 121604718 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.633094 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACCC TTGATCTGTT TGCGTCGCCA ACACCCGCGC CTATGCCGCC TGCCTCCGTG
ATTGAGCGCA TTGCCGCCCT GCGTGCCGAG CTGGACCTGC ATGCCCATCG CTATTACGTG
CTCGACGAGC CCAGCATTCC CGACGCCGAA TACGACCGGC TGTTCAAGGA GTTGCAGGCG
CTCGAAGCGG CGCATCCCGA ACTGCTCACG CCCGACTCGC CCACGCAGCG CGTCGGCGGC
AAGCCGCTGG GCCAGTTCGC CAGCGTGCGC CACCGCATTC CGATGCTCAG CATCCGCACC
GAAACCGACA CCGAAGCCAC GGGCGCCCGG AATTTCGACA CCCGCGTGCG CAAGGAACTG
GGGCTGAAGG AGTCCGATCC GCCGGTCGAG TACGTGGCCG AACTCAAGTT TGACGGCCTG
GCGATGAGCC TGCGCTACGA AAACGGCGTG CTGGTGCAGG CCGCCACGCG TGGCGACGGC
GAGGTCGGCG AAGATGTGAC GCAGAACATC CGCACCATCC GGCAGATTCC GCTTCGCTTG
CCTGCCGATG CACCTCCAGT GATGGAAGTG CGCGGCGAGG TGTACATGCG CCGCGACGAA
TTCGAGGCGC TCAACGAGCG CCAGCGCGAA AAGATCGCCA AGGGCGCGAA GGGCGAAAAG
ACCTTCGTCA ACCCGCGCAA CGCGGCGGCC GGCGGCGTGC GCCAGCTCGA TCCGGCGTTT
GCCGCCGAGC GCCGGCTGAG CTTTTTTGCC TACGGCGTGG GCGAGATCAC GCCACCCGAA
GAAGGCGGGC CGGTGTTTGA AACCCATTTT GAACTGCTGC AAACCCTGAA ATCATGGTGT
TTTCCGGTCG CTGCGCAGAC TCGGCTTGCA TATGGTGCTC CTGAATTGAT AGCGTTTCAT
GAGGCCATCG GCCGGCAGCG CGACCAACTG CCTTACGACA TCGACGGCGT GGTGTACAAG
GTCAACAGCC TGGCGCTGCA GCGCAAGATG GGCTTTGTCA GCCGCGAGCC GCGCTGGGCG
GTGGCGCACA AATACCCGGC GCAGGAGCAG CTGACCACCG TGCTGGCCAT CGACATCCAG
GTCGGGCGCA CCGGCAAGCT GACGCCGGTG GCAAAACTGG CGCCGGTGTT CGTCGGCGGC
GTGACCGTGA CCAATGCCAC GCTGCACAAC GAGGACGAAG CGCGGCGCAA GGATGTGCGC
GTGGGCGACA CGGTCATCGT GCGCCGCGCC GGCGACGTGA TTCCCGAAGT GGTCAGCGTG
CTGCTGGACA AGCGCGTGCA GGATGCGCCG CAGTTCAGCA TGCCGCGCCA GTGCCCGGTG
TGCGGCTCGG ACGCCGTCCG GGAAGAGGGC GAGGCCGACT ACCGCTGCAC CGGCGGGCTG
TTCTGCGCCG CCCAGCGCAA GGAGGCCATC CTGCATTACG CCCACAAGCG TGCCGTCGAG
ATCGAGGGCC TGGGCGACAA GCTGGTCGAG CAGTTGGTCG ATACCGGCGT CATCCGCACG
CTGCCCGACC TGTACCGGCT GGGCTTTACC TCGCTGGCCA GCCTGGACCG CATGGCCGAG
AAATCGGCCA GCAACCTAGT GGCGGCGCTG GAAAAGTCCA AGCAAACCAC CTTGCCACGT
TTTGTCTTCG GGCTGGGCAT CCGGCATGTC GGCGAAGCGA CCGCCAAGGC GCTGGCCCGG
CATTTCGGCC AGCTCGACAG CATCATGGAC GCCAGCGAGG AGCAATTGCT CGAAGTCGCC
GATGTCGGCC CCATCGTTGC CAAGAGCATT CGCACCTTCT TCGAGCAGCC GCACAACCGG
GAAGTCGTGG AGCAGCTGCG CGCCTGCGGC GTGACCTGGG AAGAGGGTGC GCCTGCCGCC
GTGGCGCCCA AGCCGCTGTC AGGCAAGACC TTCGTGATCA CCGGAACCCT GCCCGGCCTG
AGCCGCGACG ACGCCAAGGA CCGGATCGAA GCCGCGGGCG GCAAGGTGGC CGGCTCGGTC
AGCAAGAAGA CTGATTACGT CGTGGCCGGT CTTGATGCCG GCAGCAAGCT GGTGAAGGCC
GAGGCGCTGG GCGTGGCCGT CATTGATGAG GCGACCTTGC TGGCGCTGCT GGATTCGCCG
CCGGACGAAC GCATTCCCGC TTAA
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| Protein sequence | MSTLDLFASP TPAPMPPASV IERIAALRAE LDLHAHRYYV LDEPSIPDAE YDRLFKELQA
LEAAHPELLT PDSPTQRVGG KPLGQFASVR HRIPMLSIRT ETDTEATGAR NFDTRVRKEL
GLKESDPPVE YVAELKFDGL AMSLRYENGV LVQAATRGDG EVGEDVTQNI RTIRQIPLRL
PADAPPVMEV RGEVYMRRDE FEALNERQRE KIAKGAKGEK TFVNPRNAAA GGVRQLDPAF
AAERRLSFFA YGVGEITPPE EGGPVFETHF ELLQTLKSWC FPVAAQTRLA YGAPELIAFH
EAIGRQRDQL PYDIDGVVYK VNSLALQRKM GFVSREPRWA VAHKYPAQEQ LTTVLAIDIQ
VGRTGKLTPV AKLAPVFVGG VTVTNATLHN EDEARRKDVR VGDTVIVRRA GDVIPEVVSV
LLDKRVQDAP QFSMPRQCPV CGSDAVREEG EADYRCTGGL FCAAQRKEAI LHYAHKRAVE
IEGLGDKLVE QLVDTGVIRT LPDLYRLGFT SLASLDRMAE KSASNLVAAL EKSKQTTLPR
FVFGLGIRHV GEATAKALAR HFGQLDSIMD ASEEQLLEVA DVGPIVAKSI RTFFEQPHNR
EVVEQLRACG VTWEEGAPAA VAPKPLSGKT FVITGTLPGL SRDDAKDRIE AAGGKVAGSV
SKKTDYVVAG LDAGSKLVKA EALGVAVIDE ATLLALLDSP PDERIPA
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