| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1768 |
|---|
| Symbol | lpxD |
|---|
| ID | 4687777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1878572 |
|---|
| End bp | 1879639 |
|---|
| Gene Length | 1068 bp |
|---|
| Protein Length | 355 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639834774 |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
|---|
| Protein accession | YP_981999 |
|---|
| Protein GI | 121604670 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
|---|
| TIGRFAM ID | [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.297336 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0277634 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTCA GGCTTGCCGA CATGACTGAG TTGCTGGCGG ACAAGGTGCA AGCCGAACTG
CTGGGCAATT CGGAGTTGCT GATCGAGCGG CTGTCCACGC TGGAAGCCGC CGGTCCCAAC
GACCTGGCAT TCCTCAGCCA TCCGAAGTAC CTCGGCCAGC TTGCGCAGTC TGCGGCCGGC
TGCGTGATCG TTGCGCCGTC TGCCCGCGAA GCTGCTCTCA AGCGTGGCCC GTGCATTGTG
GTGGACGATC CCTATTATTA CTTTGCGCTG GTCACACAGC TCTGGAAGCG GCAACATTTT
CCAGGCGCGG CGCCGGCCAT CCATGCGAGT GCTTGCATTG ATCCGGCAGC CATCATTTCG
CCCCATGTGT CGATAGGCGC TTTTGCATGC ATTGCCGCCG GCGCCGTGAT TGGCGAGGGC
GCACGCATTG CGGAGCATTG CGTCATCGGC GCGAATGCCA TCGTCGGCGC AAACAGCCGG
CTTTCGGCGC GCGTGACGGT GGCCGACGAT TGCCGCATCG GCGAGCGCTG CATCATTCAT
CCGGGAGCGG TGATTGGCGC CGACGGATTC GGTTTTGCGC CGCATGACGG CCAGTGGGTC
AAGATCGAGC AGCTCGGCGC CGTGCGGATC GGCAACGATG TGGAAATCGG CGCCAACACC
TGCATTGACC GGGGCGCCCT GCAGGACACG GTGATTGAAG ACGGTGTCAA GCTCGACAAT
CTGGTGCAGA TTGCGCACAA CGTGCGCGTC GGCAGGCACA GCGCGATGGC GGGCTGCGCG
GGCGTGGCCG GCAGCGCCAC GATTGGCGCA CATTGCACGG TCGGCGGCGG CGCCATTGTG
CTGGGTCATC TTCGCCTGGC CGATGGCGTG CATGTCTCTG CCGCGTCCAT CGTGACAAGG
TCGCTGTTGA AGCCCGGCCA CTACACCGGC CTGTTTCCCA TCGACGACAA TGCCGCCTGG
GAAAAAAACG CCGCCACGCT CAAGCAGCTC CATGCGCTGC GTGAACGGCT CAAACAAACT
GAAAAATCCC TGCTGCAACT GCAGGGCAGC CTAGAAGAAA AACCATGA
|
|---|
| Protein sequence | MTLRLADMTE LLADKVQAEL LGNSELLIER LSTLEAAGPN DLAFLSHPKY LGQLAQSAAG
CVIVAPSARE AALKRGPCIV VDDPYYYFAL VTQLWKRQHF PGAAPAIHAS ACIDPAAIIS
PHVSIGAFAC IAAGAVIGEG ARIAEHCVIG ANAIVGANSR LSARVTVADD CRIGERCIIH
PGAVIGADGF GFAPHDGQWV KIEQLGAVRI GNDVEIGANT CIDRGALQDT VIEDGVKLDN
LVQIAHNVRV GRHSAMAGCA GVAGSATIGA HCTVGGGAIV LGHLRLADGV HVSAASIVTR
SLLKPGHYTG LFPIDDNAAW EKNAATLKQL HALRERLKQT EKSLLQLQGS LEEKP
|
|---|
| |