Gene Pnap_1613 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_1613 
Symbol 
ID4687194 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp1700324 
End bp1701325 
Gene Length1002 bp 
Protein Length333 aa 
Translation table11 
GC content66% 
IMG OID639834616 
Producthistone deacetylase superfamily protein 
Protein accessionYP_981848 
Protein GI121604519 
COG category[B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000152208 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTTACT CTGATTTAAA TCAGTTATTT GAGGATGAAC GGCCCGTGCA AGCTTTCTAC 
GCCGACAACT TTGTTTTGCC GCTGCCCACC GGGCACCGCT TTCCCATGCG CAAATACAAG
CTGCTGCGCG AGCGCCTGGT CAGCGAACTG CCGGCGGTGC GGATGATGCA GGCACCGGCC
GCCAGCGATG GCGAACTGGC CCTGGTGCAT GCGCCTGCCT ATATACAGGC CATCACCCAC
GGCACGCTGC CTGCGCCGGC CCAGCGCGAG ATCGGATTTC CCTGGAGCGA AGGCATGGCC
GAGCGCGCGC GCCGTTCGGC CGGCGCCACC GTGGCGGCGG CGCGCAGGGC GCTTGGGCTG
GCTCCAGGTT CGCGTCCTGA AGGCATCGCG GCCAACCTGG CCGGCGGCAC GCACCATGCC
TATGCCCACA AGGGCGGCGG GTTTTGCGTT TTCAACGATG CGGCGGTGGC CGCCCGGCTG
ATGCAGGCCG AATGGGCGCG CCAGCATCGC CAGGCCAGGC AGCCGCTGCA GGTCGCGGTG
ATTGACCTCG ATGTCCACCA GGGCAATGGC ACGGCCAGCA TTTTTGCCGG CGACGCCAGC
GTGTTCACGC TGTCGCTGCA CGGTGAAAAG AATTTTCCGT TCCGCAAGGA AGCCAGCGAC
CTGGATGTCG AGCTGCCCGA CGGCTGCCTG GACGCGCCCT ACCTGCAGGC GCTGGAGCAT
GCCCTGGACG AGCTGGAGCG GCGCTTCGAG CCCGGCCTGG TCCTGTTTTT GGCGGGCGCC
GACCCGTTTG CAGGCGACCG GCTGGGGCGG TTGAGCCTGA GCTTTGACGG GCTCGAAGCG
CGCGACCGCC GCGTCTTTGA CTGGGCCTGG CAGCGCCGCA TTCCGCTGGC TTTTTCGATG
GCGGGCGGCT ACGGCGTCAA CATCGATGAA ACCGTGCAGG TGCAGATGAA CACCTACCGG
GTGGCGCTGG CGTATTGGCA GAAATGGCAA TCGGCGCGCT GA
 
Protein sequence
MRYSDLNQLF EDERPVQAFY ADNFVLPLPT GHRFPMRKYK LLRERLVSEL PAVRMMQAPA 
ASDGELALVH APAYIQAITH GTLPAPAQRE IGFPWSEGMA ERARRSAGAT VAAARRALGL
APGSRPEGIA ANLAGGTHHA YAHKGGGFCV FNDAAVAARL MQAEWARQHR QARQPLQVAV
IDLDVHQGNG TASIFAGDAS VFTLSLHGEK NFPFRKEASD LDVELPDGCL DAPYLQALEH
ALDELERRFE PGLVLFLAGA DPFAGDRLGR LSLSFDGLEA RDRRVFDWAW QRRIPLAFSM
AGGYGVNIDE TVQVQMNTYR VALAYWQKWQ SAR