Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_1613 |
Symbol | |
ID | 4687194 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008781 |
Strand | + |
Start bp | 1700324 |
End bp | 1701325 |
Gene Length | 1002 bp |
Protein Length | 333 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639834616 |
Product | histone deacetylase superfamily protein |
Protein accession | YP_981848 |
Protein GI | 121604519 |
COG category | [B] Chromatin structure and dynamics [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000152208 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTTACT CTGATTTAAA TCAGTTATTT GAGGATGAAC GGCCCGTGCA AGCTTTCTAC GCCGACAACT TTGTTTTGCC GCTGCCCACC GGGCACCGCT TTCCCATGCG CAAATACAAG CTGCTGCGCG AGCGCCTGGT CAGCGAACTG CCGGCGGTGC GGATGATGCA GGCACCGGCC GCCAGCGATG GCGAACTGGC CCTGGTGCAT GCGCCTGCCT ATATACAGGC CATCACCCAC GGCACGCTGC CTGCGCCGGC CCAGCGCGAG ATCGGATTTC CCTGGAGCGA AGGCATGGCC GAGCGCGCGC GCCGTTCGGC CGGCGCCACC GTGGCGGCGG CGCGCAGGGC GCTTGGGCTG GCTCCAGGTT CGCGTCCTGA AGGCATCGCG GCCAACCTGG CCGGCGGCAC GCACCATGCC TATGCCCACA AGGGCGGCGG GTTTTGCGTT TTCAACGATG CGGCGGTGGC CGCCCGGCTG ATGCAGGCCG AATGGGCGCG CCAGCATCGC CAGGCCAGGC AGCCGCTGCA GGTCGCGGTG ATTGACCTCG ATGTCCACCA GGGCAATGGC ACGGCCAGCA TTTTTGCCGG CGACGCCAGC GTGTTCACGC TGTCGCTGCA CGGTGAAAAG AATTTTCCGT TCCGCAAGGA AGCCAGCGAC CTGGATGTCG AGCTGCCCGA CGGCTGCCTG GACGCGCCCT ACCTGCAGGC GCTGGAGCAT GCCCTGGACG AGCTGGAGCG GCGCTTCGAG CCCGGCCTGG TCCTGTTTTT GGCGGGCGCC GACCCGTTTG CAGGCGACCG GCTGGGGCGG TTGAGCCTGA GCTTTGACGG GCTCGAAGCG CGCGACCGCC GCGTCTTTGA CTGGGCCTGG CAGCGCCGCA TTCCGCTGGC TTTTTCGATG GCGGGCGGCT ACGGCGTCAA CATCGATGAA ACCGTGCAGG TGCAGATGAA CACCTACCGG GTGGCGCTGG CGTATTGGCA GAAATGGCAA TCGGCGCGCT GA
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Protein sequence | MRYSDLNQLF EDERPVQAFY ADNFVLPLPT GHRFPMRKYK LLRERLVSEL PAVRMMQAPA ASDGELALVH APAYIQAITH GTLPAPAQRE IGFPWSEGMA ERARRSAGAT VAAARRALGL APGSRPEGIA ANLAGGTHHA YAHKGGGFCV FNDAAVAARL MQAEWARQHR QARQPLQVAV IDLDVHQGNG TASIFAGDAS VFTLSLHGEK NFPFRKEASD LDVELPDGCL DAPYLQALEH ALDELERRFE PGLVLFLAGA DPFAGDRLGR LSLSFDGLEA RDRRVFDWAW QRRIPLAFSM AGGYGVNIDE TVQVQMNTYR VALAYWQKWQ SAR
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