| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1604 |
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| Symbol | |
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| ID | 4686680 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 1687984 |
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| End bp | 1690194 |
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| Gene Length | 2211 bp |
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| Protein Length | 736 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639834607 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_981839 |
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| Protein GI | 121604510 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.362235 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTTGA AGAAAGTCCC TGCCGTGCAG CCCAAGTCCA CCCAAGCCCA ACTTCTCGCC
GCTGCAGACG CCCTGCTGAA AAGCGCCGCG CCTGCCAAAA AGAAACCCGG CCGCCCGCCC
AAGGCTCCGG CCGCAGCAGG TGCGCCCGTA GCCGCCGCTG CCGCCGTCAA GCGCGCGCCC
CGCAAAACCA AGGAATCGGG CCTGGACGGT GATGAAGACC TGTCCGACAT CGAAGCCGAG
TTCGCCGAAG AGCCGGCAGT GGTCGAAGCC ACGGCCACCA CCGAAAAGGT CAAGCCGCTG
CGCATGAAGA TCAGCAAGGC CAAGGAACGC GCCTTGATGA AGGAGTTCGG CCTGGACGAA
ACGGTTTTGT CCGAAGAAGA CATCCTCAAG CGCCGCGTGC GCCTGAAAAC CCTCATCAAG
CTCGGCAAGA CGCGCGGCTA CCTCACGCAC GGCGAAATCT CCGACCACCT GCCCGACAAG
CTGGTCGATG CCGAGACGCT GGAAGTCGTC ATCAACATGC TCAACGACAT GGGCGTGGCC
GTCTATGAGC AGGCGCCCGA CGCCGAAACC CTGCTGCTGA ACAACACCGG CGCCACCGTG
GCGACCGAGG AAGAAGCCGA GGAAGAAGCC GAAGCCGCGC TGTCCACCGT CGATAGCGAG
TTCGGCCGTA CCACCGACCC GGTGCGCATG TACATGCGTG AAATGGGAAC GGTCGAGTTG
CTGACGCGCG AGGGCGAGAT CGAAATCGCC AAGCGCATCG AAGGCGGCCT GATGAAGATG
ATGGAAGCGA TTTCCGAAAG CCCGGCGACG ATTGCCGAAA TCATGCGGCT GGCCGATGAC
ATCCGCGAAG GCAAGGTCGT CATCTCCACC GTGGTCGATG GATTCTCGAA CCCCAACGAG
GCCGACGACT ATGTGGCCGA GGAAGACTTC GACGAGTTCG ACGAAGACGA CGATGACGAC
GGCAAGGGCG GCTCCAAGGC ACTGACCAAG AAGCTCGAAG AGCTGAAGAA AGAAGCGCTC
AGCCGTTTCG AGAAGGTTGG CGAATATGCC GAAAAAGTCA AAAAACTCTA CGAAAAAGAA
GGCTACGGCG GCCCGACGTA CCTGAAGACG CAAAAAGCCC TCAGCGACGA GCTGATGACG
GTGCGTTTTA CCGCCAAGAC GATTGAAAAG CTGTGCGACC TGCTGCGCGG CCAGGTGCTG
GACGTGCGCA AGAAGGAACG CGAGCTGCGC CGCATCATCG TCGAGAAGTG CGGCATGCCG
CAGGAAGTCT TCATCAAGGA TTTCCCGCCC AACCTGCTGA ACCTGAAATG GGTTGAAAAA
CAGGTCGCCG CCGGCAAGCC GTGGTCCAAC GTCATGGCGC GCAACATTCC GCCAATCCAG
GAACTGCAGA CCAAGCTCGG CGAGTTGCAG GCGCGCGTCG TGGTGCCTCT GCTGCACCTC
AAGGACATCA ACAAGCGCAT GAACGAAGGC GAATCGAACT CGCGCGACGC CAAGAAGGAA
ATGATCGAGG CCAATCTGCG CCTGGTGATT TCGATTGCGA AAAAGTACAC GAATCGCGGC
CTGCAGTTCC TCGACCTGAT CCAGGAAGGC AACATCGGCC TGATGAAGGC GGTGGACAAG
TTCGAATACC GGCGCGGCTA CAAGTTCTCG ACCTACGCGA CCTGGTGGAT TCGCCAGGCC
ATCACGCGCT CGATTGCCGA TCAGGCGCGG ACCATCCGCA TCCCGGTGCA CATGATCGAG
ACCATCAACA AGATGAACCG CCTGAGCCGC CAGCATCTGC AGGAGTTCGG CTTCGAGCCC
GACGCCAGCA TCCTGGCCGA GAAGATGGAG ATTCCTGAAG AGAAGATCCG CAAGATCATG
AAGATCGCCA AGGAGCCGAT CTCGATGGAA ACGCCGATTG GCGACGACGA CGATTCGCAC
CTGGGCGACT TCATCGAGGA CGGCGCCAAC ACCGCGCCGC TCGAAGCGGC GATGCAGGCC
GGCCTGCGCG ATGTGGTGAA AGACATCCTC GACAGCCTGA CGCCGCGCGA AGCCAAGGTG
CTGCGCATGC GCTTCGGCAT CGAGATGTCC ACCGACCACA CGCTGGAAGA AGTCGGCAAG
CAGTTCGACG TGACGCGCGA GCGCATCCGC CAGATCGAAG CCAAGGCGCT GCGCAAGCTC
AAGCACCCAT CGCGTTCGGA TAAATTGCGC AGCTTTATCG ACACGCTCTA A
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| Protein sequence | MSLKKVPAVQ PKSTQAQLLA AADALLKSAA PAKKKPGRPP KAPAAAGAPV AAAAAVKRAP
RKTKESGLDG DEDLSDIEAE FAEEPAVVEA TATTEKVKPL RMKISKAKER ALMKEFGLDE
TVLSEEDILK RRVRLKTLIK LGKTRGYLTH GEISDHLPDK LVDAETLEVV INMLNDMGVA
VYEQAPDAET LLLNNTGATV ATEEEAEEEA EAALSTVDSE FGRTTDPVRM YMREMGTVEL
LTREGEIEIA KRIEGGLMKM MEAISESPAT IAEIMRLADD IREGKVVIST VVDGFSNPNE
ADDYVAEEDF DEFDEDDDDD GKGGSKALTK KLEELKKEAL SRFEKVGEYA EKVKKLYEKE
GYGGPTYLKT QKALSDELMT VRFTAKTIEK LCDLLRGQVL DVRKKERELR RIIVEKCGMP
QEVFIKDFPP NLLNLKWVEK QVAAGKPWSN VMARNIPPIQ ELQTKLGELQ ARVVVPLLHL
KDINKRMNEG ESNSRDAKKE MIEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVDK
FEYRRGYKFS TYATWWIRQA ITRSIADQAR TIRIPVHMIE TINKMNRLSR QHLQEFGFEP
DASILAEKME IPEEKIRKIM KIAKEPISME TPIGDDDDSH LGDFIEDGAN TAPLEAAMQA
GLRDVVKDIL DSLTPREAKV LRMRFGIEMS TDHTLEEVGK QFDVTRERIR QIEAKALRKL
KHPSRSDKLR SFIDTL
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