| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1504 |
|---|
| Symbol | |
|---|
| ID | 4689200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 1593413 |
|---|
| End bp | 1594012 |
|---|
| Gene Length | 600 bp |
|---|
| Protein Length | 199 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 639834507 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_981739 |
|---|
| Protein GI | 121604410 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCACGCCT TGCTTAAATT TTCAAAAGCC GTGGACTGGC TGAACACCCA GGTCGGCAAA
TACGCCATCT GGCTGATCCT GGCCTCCACC GTCATCAGCG GCGTCAATGC CATCATTCGC
AAGCTGTTCA ACATGAGTTC AAACGCCTAC CTGGAAGTGC AGTGGTATCT GTTTGCCGCC
TCCTTCCTGC TTGCGGCAGG CTACACGCTG CTGAACAACG AGCATGTGCG CATCGATGTG
GTGTCCAGCC GCCTGTCCAA GCGCGGGCAG ATCTGGGTGG ACATCATCGG ATTCACCTTC
TTTTTGACGC CGATCTGCCT GGCCGTGCTC TGGTACGGCA TTCCGTTTTT CCTCCAGGGC
CTGCGCTCGG GCGAAACGTC GTCGAATGCC GGCGGCCTGA TCCGCTGGCC GGTGTACGCC
ATGATTCCGC TGGGTTTCAC GCTGCTGATG CTGCAGGGCT GGTCGGAACT GATCAAGCGC
TTCGCCTTTC TCCAGGGGCT GATTGACGAC CCGACGCTCA AGCGGGTTGA AAAAACCAGC
GAAGAAGAAC TGGCCGAAGC GATCAGCCGG CTCGCCGAGT CAAAAACCAG CGCCCGCTGA
|
|---|
| Protein sequence | MHALLKFSKA VDWLNTQVGK YAIWLILAST VISGVNAIIR KLFNMSSNAY LEVQWYLFAA
SFLLAAGYTL LNNEHVRIDV VSSRLSKRGQ IWVDIIGFTF FLTPICLAVL WYGIPFFLQG
LRSGETSSNA GGLIRWPVYA MIPLGFTLLM LQGWSELIKR FAFLQGLIDD PTLKRVEKTS
EEELAEAISR LAESKTSAR
|
|---|
| |