| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1502 |
|---|
| Symbol | |
|---|
| ID | 4689562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1590446 |
|---|
| End bp | 1591528 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639834505 |
|---|
| Product | TRAP dicarboxylate transporter- DctP subunit |
|---|
| Protein accession | YP_981737 |
|---|
| Protein GI | 121604408 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGTC GATCACTCAT CAAAAACGCC GGCATTGCCG GTGTGCTGGC TGCCGGCATC
GCGCCTGCGG TGCATGCCCA GGCTGCTGTC CGCTGGCGCC TGGCGTCGAG CTTTCCAAAA
TCGCTCGACA CCATTTTTGG CAGTGCCGAG ATGTTTGCCA AGACGGTCAA GGCCCTGTCG
GGCGGCAAGT TTGAAGTGTC GGTGCATGCC GGCGGCGAGT TGATGCCTGC GTTCGGCGTG
GTCGATGCGC TGCAAAACGG CACCGTCGAG ATGGCGCAGA CCGCGCCTTA CTATTTCACC
GGGAAAGACC CGATCTTTGC CTTCGGCTGC GCCGTGCCTT TCGGCCTGAC CGCGCGCCAG
ATGGATGCCT GGATGGAGCA TGGCAACGGC CGCAAGCTGA TGGATGCGTT CTACGCCAAG
TACAACATCA AGAGCCGCAG CGCCGGCAAC ACCGGCACCC AGATGGGCGG CTGGTACCGC
AAGGAGATCA AGAGCGTGGC CGATTTGAAG GGCCTGAAAA TGCGCATGGG CGGCGGCCTG
TTCGGCGAAG CCATGCAAAA GCTCGGCGTC GTGGCCCAGA ACATGCCCGC CGGCGAGGTC
TATCAGGCGC TTGAAAAAGG CACGCTGGAC GCGACCGAGT TCGTCGGCCC TTACGACGAC
GAAAAGCTCG GCTTCAACAA GGTCGCGCCT TTTTATTACT ACCCCGGCTG GTGGGAAGGC
GGCGCCGAGC TGGAATTCTT CATCAACACC AAGGCCTATG CCGCCTTGAC GCCCGAGTTC
CAGGCGATTG TCGATGCGGC TACGACGGTC GCGGCGCGCG ACATGACGGC CAAGTACGAC
GCGGTCAACC CGATTGCCCT GAAGCGCCTG GTGGCGGCCA AGACCCAGCT CAAGCCTTTT
CCCAAGGAAA TCATGGACGC GGGCTTCAAG GCGTCGATGG AAGTGTTTGC CGCGCACGAA
GCCAAGTCGC CTGAATTCAA GAAAATCCAC CAGGACATGC GCGCCTTCCA GCGCGACCAG
TTGCTGTGGG CGCGCTTCTC GGAATTCCGT TTTGACAGCT ACCTGACCGG CGCCAAGCTG
TAA
|
|---|
| Protein sequence | MDRRSLIKNA GIAGVLAAGI APAVHAQAAV RWRLASSFPK SLDTIFGSAE MFAKTVKALS
GGKFEVSVHA GGELMPAFGV VDALQNGTVE MAQTAPYYFT GKDPIFAFGC AVPFGLTARQ
MDAWMEHGNG RKLMDAFYAK YNIKSRSAGN TGTQMGGWYR KEIKSVADLK GLKMRMGGGL
FGEAMQKLGV VAQNMPAGEV YQALEKGTLD ATEFVGPYDD EKLGFNKVAP FYYYPGWWEG
GAELEFFINT KAYAALTPEF QAIVDAATTV AARDMTAKYD AVNPIALKRL VAAKTQLKPF
PKEIMDAGFK ASMEVFAAHE AKSPEFKKIH QDMRAFQRDQ LLWARFSEFR FDSYLTGAKL
|
|---|
| |