| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1444 |
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| Symbol | |
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| ID | 4688698 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 1532655 |
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| End bp | 1534169 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 639834447 |
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| Product | RND efflux system outer membrane lipoprotein |
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| Protein accession | YP_981679 |
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| Protein GI | 121604350 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGTGT GGCGCGCTTC GGTTCGCATG GCGCTGGTCT CGCTGGCCGG GCTGGTGGCA
GCTGGCCTGA TCGCCACCGG CCTCAGCGGT TGCGCCGACA TGTCGGGCAT TGCGCCGCAA
GCCAGCCTGC GCGATGCGCC GTCGCTGGGA TTGAACACGG CCACCGCGCC AGCGCCGGTG
GCCGCCGAAT GGTGGCGCGA TTTCGGCGAC GAAACCCTCA ATGGCCTGGT TACCAAGGCG
CTGGAAACCA GCCCCAGCCT GAAACTTGCG CAGGCACGGC TGGCGCGCGC GCAAGCCGCC
ACCGATGTGG CGCATGCCGC AACCTTGCCG CAAGTCAATG GCCAGCTCGA CCTGACGCGC
CAGCGCTACA CCGCCAACGG CGCGGTGCCG CCGCCGCTGG CCGGCTCCAT CCGCGAAAGC
GCAACGGCCC AGTTGGCCGC GAGCTGGGAG CTGGACTTTT TTGGCAAGAA CCGCACTGCG
CTCGACGCCG CGCTGGGCAG CGCGAAGGCC GCCCAGGCCG ATGCCCAGGC CGCGCGCGTG
CTGCTGGCCA GCCAGGTGGC ACGCAGCTAT TTCCAGCTGG TTCGTCTGAA TGAACAGTCT
GGCGTGGCAA GCCGCACGCT GGCCCAGCGC GAAGAAACCC TCAAGCTGGT CCGGGACCGC
GTCAATGCCG GCCTGGACAC CCGGCTGGAA TTGCGCCAGA GCGAAGGCGG CCTGCCCGAG
GCGCGCCTGC AGTTAGAGGC CGTGCAGGAA CAGATGGCGC TGACGCGCAA CGCGCTCAAT
GCCCTGCTTG GACAGCCAAA CAGTGCTTCT GCGCTTGTCC CGTCTGCGCA ATCAGCTATT
AAAAATGTAG CATTAACGCC GAATATTCCA GCCGACCTGC TGGGGCGCCG CGCCGACATC
GCGGCCGCGC GCTGGCGCGT CGAAGCCTCG TCCAAGGACG TGGTGAATGC CAAAACCCAG
TTCTACCCGA ACATCAACCT GGTCGCTTTT GCCGGTTTTT CCAGCATCGG GCTGGGCAAT
CTGCTGAACT CGGGCAGTCA GCAGTGGGGC GTCGGCCCGG CCCTGCGCCT GCCGATTTTC
GAGGCTGGCC GGCTGCGCGC CAACCTGCGC GGCAAAACCG CTGACCTGGA TGCGGCGGTG
GAAAGCTACA ACGCGGCAGT GATTGACGCG GTGCGCGATG TGGCCGACCA AGTCGCCTCG
TCGCAGGCCA TAGGCCGCCA GCAGGCCGAA CAGCGGGCAG CGCAGGACGC GGCGGAAAGC
GCCTACGGCA TCGCCGTGCA GCGCTACAAG GCGGGGCTGG GCAATTACCT GAATGTGCTG
ACGGCCGAAA CCAGCGTGCT GGCCCAGCGC CGGCTGGCCG TCGATCTGGC GGGCCGCGCG
CTGGACACGC AGGTGGCGTT GATCCGCGCG CTGGGCGGCG GTTATGCACC TGAGCAATTG
CCTGGTGCGC AAAATGCTAC AAAATTAATA GCTGTTAATG CACGTCCAGT AAGCGTAAAC
GGCTTATTTG ACTAA
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| Protein sequence | MPVWRASVRM ALVSLAGLVA AGLIATGLSG CADMSGIAPQ ASLRDAPSLG LNTATAPAPV
AAEWWRDFGD ETLNGLVTKA LETSPSLKLA QARLARAQAA TDVAHAATLP QVNGQLDLTR
QRYTANGAVP PPLAGSIRES ATAQLAASWE LDFFGKNRTA LDAALGSAKA AQADAQAARV
LLASQVARSY FQLVRLNEQS GVASRTLAQR EETLKLVRDR VNAGLDTRLE LRQSEGGLPE
ARLQLEAVQE QMALTRNALN ALLGQPNSAS ALVPSAQSAI KNVALTPNIP ADLLGRRADI
AAARWRVEAS SKDVVNAKTQ FYPNINLVAF AGFSSIGLGN LLNSGSQQWG VGPALRLPIF
EAGRLRANLR GKTADLDAAV ESYNAAVIDA VRDVADQVAS SQAIGRQQAE QRAAQDAAES
AYGIAVQRYK AGLGNYLNVL TAETSVLAQR RLAVDLAGRA LDTQVALIRA LGGGYAPEQL
PGAQNATKLI AVNARPVSVN GLFD
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