| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1321 |
|---|
| Symbol | |
|---|
| ID | 4686311 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 1412506 |
|---|
| End bp | 1414134 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 639834324 |
|---|
| Product | IS605 family transposase OrfB |
|---|
| Protein accession | YP_981557 |
|---|
| Protein GI | 121604228 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01766] transposase, IS605 OrfB family, central region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00289042 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGC GCCCCGTCTT CACTTACCAG ACCCGTCCTG CACTCGATGC AGCGCAGGCG
GTGATGCTCG ATGCGTATGC CGAACTGTAC GGGCGTGCCG AGCGCAGTCT TTTTGCAGCC
CTGCAGGCCG GTGGCAAGCT CAACGATCTC AAGCGCGATT TCTTGTCCCG GTTCGGCATC
ACGGCCCGTC AGTTCAATGC GGTGCGTATT GGCCTGGAAG GCAAGATCGA CTCGATCAGG
CAGCGCAGGC CCGAGCTGAT TGCCGAGGCG CAAGCGCGCA TCAAGAAAGC GCTCAAGGTC
ATTGCCAGGC TGACGGGCAA AGCGCCAGGC AGCGACAAGC TGCACCAGAA AAAGCGCCGG
CTGGCCCTGC TGCAATCGCG CCTCTCAGCC ATGCAGGGTG ATCACGAATC GGGCAAGACT
CGCTTGTGCT TTGGCAGTAA AAAGCTGTTT CACGCGCAAT TCGAGCTGCA GGCCAATGGC
TACGACTCCC ATGAAGCATG GAAAAAGGAC TGGACGGCCG GGCGCTCCAG CCAGTTCTTT
GTATTGGGCA GCAAGGATGA GTCAGCGGGC TGCCAAGGCT GCCGGGCCGC GGTCGCCGGC
GACGGCAGTT TGAAGCTGAC CTTGAGACTG CCCGATGCCC TGTCCGGTCA GGGCAAGCGC
CTGACGCTTA TTGGCATCCG GTTTGCTTAT GGTCACAGCC AGATAGTGGC CGCGCTGTGT
ACCAGCCAGC ACGTTACAAC CAAAACCAAG GCCGGCGTGG CAATGGTCAA GCGCACGGGC
ACCGCGTTGA GTTACCGCTT CGTGCGTGAT GCCAAAGGCT GGCGGGTGTT TGTCAGCGTA
CACGCTAAAG CTGTCAAGGT CAGCACCAGC GCAGGCATGG GTTCGATGGG CGTGGATGTC
AATGCCGACC ACCTGGCAGT CGCTGAAACA GACCGTTTTG GCAACTTGAT TGCCGCCCGC
AGAATCGACC TGCACACCTA TGGCAAATCG GCGGATCAGG CCAAGGCGCT GATTGGCGAT
GCGGTGGGCG CCCTCGTCAT GCAAGCCCGA ACGAACGGCA AGCCCGTCGT CATCGAAAAG
CTCAATTTCC AGAAGAAGAA GGCCGAGCTG GAAGCCGTCA ACCGCAAGCA GGCCTGCCTG
CTGTCCTCGT TTGCCTGCAA CAGCATTGCA TCGGGTTTGA AGGCCGCAGC CTTTCGTGCC
GGTGTCGAAG TGATCGAAGT GAATCCGGCC TACACCTCAG TGATCGGTGC GGTGAACCAC
GCACGGATTA AAGGAGTCTC GGTTCATCAG GGCGCAGCCT TGGCTATCGC CCGTCGAGGT
TTGGGTTTGT CCGAGCGTTC GGCTGTGTCT GTGGGTCTGG TGCCCACTGG CAACGGCGGT
CATGTCACCT TCGAGCTACC TGTAAGGAAT CGCTTGAAGC ATGTATGGTC GTTCTGGTCG
AAGGTTCGCA CAAATCTCAA AGCAGCGCAT GCAGCGCATT TCCGGTGCGG GGATCATCAA
AAAGACCCGC CACCTCTGGC CCCGGCAACG CGGTCACTGG GTGCCATCTG GTCTTCCACG
GCGCAATTCC GTGGTGCGAA TCGTCAGCAC AACTGTTCTG CTGACGTGCT GGAAGATGTT
CCGTGGTAG
|
|---|
| Protein sequence | MSERPVFTYQ TRPALDAAQA VMLDAYAELY GRAERSLFAA LQAGGKLNDL KRDFLSRFGI
TARQFNAVRI GLEGKIDSIR QRRPELIAEA QARIKKALKV IARLTGKAPG SDKLHQKKRR
LALLQSRLSA MQGDHESGKT RLCFGSKKLF HAQFELQANG YDSHEAWKKD WTAGRSSQFF
VLGSKDESAG CQGCRAAVAG DGSLKLTLRL PDALSGQGKR LTLIGIRFAY GHSQIVAALC
TSQHVTTKTK AGVAMVKRTG TALSYRFVRD AKGWRVFVSV HAKAVKVSTS AGMGSMGVDV
NADHLAVAET DRFGNLIAAR RIDLHTYGKS ADQAKALIGD AVGALVMQAR TNGKPVVIEK
LNFQKKKAEL EAVNRKQACL LSSFACNSIA SGLKAAAFRA GVEVIEVNPA YTSVIGAVNH
ARIKGVSVHQ GAALAIARRG LGLSERSAVS VGLVPTGNGG HVTFELPVRN RLKHVWSFWS
KVRTNLKAAH AAHFRCGDHQ KDPPPLAPAT RSLGAIWSST AQFRGANRQH NCSADVLEDV
PW
|
|---|
| |