| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_1276 |
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| Symbol | |
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| ID | 4686828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 1366393 |
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| End bp | 1367094 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639834279 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_981512 |
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| Protein GI | 121604183 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.220673 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATTTCCG ACATCAAGGC GGTGCGACCC GGCACCCCGG CCAGAGCGGA TTCCATCCCC
CTTTTCCAGA TCATTCACGC CGACGACAGC CTGCTGGTGC TCAACAAGCC CGCGGGCCTG
CTGGCCGTGC CCGGGCGCGG CGAGGACAAG CAGGACTGCC TGAGCCGCCG CGTGCAGTCG
CTCTACCCTG ACGCGCTGAT CGTGCACCGG CTGGACATGG CCACCTCGGG CCTGATGCTG
ATGGGCCGGG GCATCGCCAT GCAGCGCGCC CTCGGCCAGT TGTTCGAGCG CCGCGAAGTC
TATAAGCGCT ACCTCGCGGT CGTCGATGGC CGGCTGGCAC CCGCGCCCGA GCCCGGTGGC
TGGGGCCTGA TTGACCTGCC GATTGCCGTG GACTGGCCGC GCCGCCCGCT GCGCATCATT
GATGCCGCCA GCGGCAAGCC CAGCCAGACG CGCTGGCGCA GCGTGGCGTT TGATGCGGCG
GCCAACAGCA CGCGCGTCGA GCTGGAGCCG CTCACCGGCC GCTCGCACCA GCTGCGCGTG
CACCTGCAGG CGCTGGGCCA TCCGATCCTG GGCGATGCGC TGTATGCGCC CGAAGCGGTG
CAGGCCAGGG CCGCGCGCCT GCTGCTGCAT GCCTGCGCCC TGCGGCTGCT TCATCCGGCC
AGCGGCGCCC TGCTGTCTGT TGAAAGCCCA CCCGGCTTTT AG
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| Protein sequence | MISDIKAVRP GTPARADSIP LFQIIHADDS LLVLNKPAGL LAVPGRGEDK QDCLSRRVQS
LYPDALIVHR LDMATSGLML MGRGIAMQRA LGQLFERREV YKRYLAVVDG RLAPAPEPGG
WGLIDLPIAV DWPRRPLRII DAASGKPSQT RWRSVAFDAA ANSTRVELEP LTGRSHQLRV
HLQALGHPIL GDALYAPEAV QARAARLLLH ACALRLLHPA SGALLSVESP PGF
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