| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0996 |
|---|
| Symbol | |
|---|
| ID | 4687313 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 1047602 |
|---|
| End bp | 1049515 |
|---|
| Gene Length | 1914 bp |
|---|
| Protein Length | 637 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 639833995 |
|---|
| Product | ATP-dependent OLD family endonuclease |
|---|
| Protein accession | YP_981234 |
|---|
| Protein GI | 121603905 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3593] Predicted ATP-dependent endonuclease of the OLD family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGGTT GGGGAATACG CCGTGTGGCG TATGAAGCAT GGCATAAGTT GTCAAAACCC
CTCAATTTGT CATGCGAGAG AGTCGCGAAG TTCACCACTG ACATTTTTTC AAAAGTAAAC
TTATCATGTT ACTCAAAGCA GAAAACAGTA AGAAATAAAA TCAATATGCA TCTTTCAAAG
ATAAAACTAT GGAATTTCCG AAAATATGGC GACAACTCAA CATTTATCTT GGAAAAACCA
AATCTTTATC TAGACTTCAA CTCTGGCCTA AATGTTTTAA TAGGTGAAAA CGATTCTGGA
AAATCTGCAA TCATAGATGC GATTCGCCTT GTGATGAAAA CGCATAGTTA TGACTGGCTA
CGAATCGATG ATGACGATTT TCATGTAGGA CAGAACAGAC TAAGAATCGA GCTAACTTTG
GCAGATATTA AGCCAGAGGA GGGTAAAAAT TTTACAGAAT TTTTGTCTTG GGAAATACTC
GATGGAATTA CAGTTCCATC CCTACGACTC ATACTTGATG TCAAGAAGAA TCTCCTTACT
AACCAAGTTT CCCCCTATGA AGTACGTGCC GGAGCTGATG CCGATGGGAG ACAACTTAGT
CCAGAAGCGA AAGAGTACCT AAAAGTAACG TACCTCAAGC CTCTCAGAGA TGCCAAAGAG
GAATTAGTTG CAAGAAAGAA TTCTCGTCTT TCTCAAATTC TCGTTGGACA TGAGGCATTC
AAAAATCGTG GAACTGACCA TTTACTAATG GGGCAATTAG CAAACTTTAA CGAATCTATA
GAGAATTATT TCAACGGAAC AGATCTGATG GGTGTAGAAA TTACGGATCA ATTTGGTAAA
AGTTTAAAAG ATCAAATTGA TACATACGTA CAAGCACTTT ATGAGCCAGA CAAAAAAACT
GAATTAGCTG TTACAGAACG AGGTCAACTA AAGAACCTCC TAGAAAAACT CGAACTATCT
ATTCAAGGAG AAACCCGACC AGGATTGGGT ACCCTGAATA GACTTTTCAT GGCATCCGAA
CTTCTGCACT TAAACAAAAA TAACTGGACA GGAATACGCC TTGGATTAGT AGAAGAGCTT
GAAGCCCACT TACATCCACA AGCACAGATG CAAGCAATTG AGACGTTTCA AAAACATGAT
GAAGTACAAC TAATACTTAC TACACACAGT CCCAATATTG GCTCAAAACT AGAGCTCAAA
AATCTGATTA TTTGTAGCGG AGGCAATGCA TTTTCTATGA ATGCCGAAAA CACAGAATTA
AACACTGATG ACTACGTATT TCTTCAACGA TTTTTAGATG TAACAAAGGC GAATCTATTC
TTTTCAAAAG GAACTATTCT TGTGGAAGGA TGGGCAGAAG AATTAATATT ACCAGAGTTT
GCAAAACTAA TAAACTTCAA CCTCACCGAA AAGGGTGTTT CCGTTATAAA CGTAGCAAGT
ATTGCCTTTA TTCACTATGC AAATATTTTC AAAAGAAAAA AAATTCCGCA CCTCATACTA
CCAGTAGCCA TTATTACTGA TGTGGATATC GCTCCAAACG ACGAAGATGG ACCAATCCCA
GGCGACAAAC AGAAGCTTAC CGAAGCATGT AGACTGAAAA AAGAAAAATA CGATGGCCAA
TGTGTAAAGT CATTTATTGC ACCTCAATGG ACACTCGAAT ACTGTCTTTC TAAGTCAAGC
ACCTTCAGAG AAAAATTTGC AGAGATCACA AAGACTGTGC ATAGCAAAAC AGACTGGACA
GACTTCGATG CAAAACTAGC TGAAAAGTTA AAAAATAAAA GCTTAAAGAA AACAGAGATT
GCAAGCCGGC TGGCACAAGC AATTTCAAAG GGCGAAATTG ACAAAACCAA AATAGCTGAA
GATATCCATA TCAAATACTT AGTTGACGCT ATCAAATATG CTTGTACAAC TTAA
|
|---|
| Protein sequence | MRGWGIRRVA YEAWHKLSKP LNLSCERVAK FTTDIFSKVN LSCYSKQKTV RNKINMHLSK
IKLWNFRKYG DNSTFILEKP NLYLDFNSGL NVLIGENDSG KSAIIDAIRL VMKTHSYDWL
RIDDDDFHVG QNRLRIELTL ADIKPEEGKN FTEFLSWEIL DGITVPSLRL ILDVKKNLLT
NQVSPYEVRA GADADGRQLS PEAKEYLKVT YLKPLRDAKE ELVARKNSRL SQILVGHEAF
KNRGTDHLLM GQLANFNESI ENYFNGTDLM GVEITDQFGK SLKDQIDTYV QALYEPDKKT
ELAVTERGQL KNLLEKLELS IQGETRPGLG TLNRLFMASE LLHLNKNNWT GIRLGLVEEL
EAHLHPQAQM QAIETFQKHD EVQLILTTHS PNIGSKLELK NLIICSGGNA FSMNAENTEL
NTDDYVFLQR FLDVTKANLF FSKGTILVEG WAEELILPEF AKLINFNLTE KGVSVINVAS
IAFIHYANIF KRKKIPHLIL PVAIITDVDI APNDEDGPIP GDKQKLTEAC RLKKEKYDGQ
CVKSFIAPQW TLEYCLSKSS TFREKFAEIT KTVHSKTDWT DFDAKLAEKL KNKSLKKTEI
ASRLAQAISK GEIDKTKIAE DIHIKYLVDA IKYACTT
|
|---|
| |