| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0742 |
|---|
| Symbol | |
|---|
| ID | 4688747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 784911 |
|---|
| End bp | 787361 |
|---|
| Gene Length | 2451 bp |
|---|
| Protein Length | 816 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639833737 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_980982 |
|---|
| Protein GI | 121603653 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03607] patatin-related protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.885952 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0715613 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAAA AAGAATTGCG GCTGGCGATC GTGTTCTTTG GAGGCGTCTC ACTCGCCATT
TACCAGCATG GCATCAACCG GGAAATACTG AACCTGATCC GGGCATCCAA GCTTTATCAC
CGGAACAGGC TGGGCGAAGA CAGCAATGTC CCTTCATTTC GCAGCCGCTA CCCTGATGAG
CCAGAGCGCT CGACAGGAGA AGTCTATCTC CAGTGTTTTT CGGCCATCGG GCAACACCTC
TCCCTGCGGG TGATGGTGGA CGTCATTTCC GGATCATCTG CAGGCGGCAT CAACGGCATC
GCGCTCGCCC GAGCCCTGGC GCATGATCTC AGCCTTGCGC CGCTGACCGA TATGTGGCTG
GCTGAAGCCG ACATGCTCAA GCTGCTCGCG CCCGAGGCCA AGGCGCGGCT TTGGAGTAAA
TGGATTTTCT GGCCTTTCGT GCGGCCCCTG CTGGCACGGC TCCACCGGGA AGGCCTGTTC
ATCGGCAAGA TCGATGCCGA AATGCAGGAA CGGGTTTCGG TGTTCCTGCG CTCGCGCTGG
TTCAAGCCGC CCCTTGATGG CCCTCGTCTC GCCGCCCTCG TGCTTGATGG CCTGACGGCC
ATGGAAAGAC CGGAGGCCTC GACAGAATCC CTGCTTCCGC CGGGCACAAG GCTGGACCTG
CTGGTCACGG CAACCGATTT CCGGGGTCTT GACCGGTCGA TTTTTATTCA CGATCCACCC
ATGGTCAAGG AACGCGAGCA TCGTCACCTG CTGCGCTTTC GCCTCGACCA TGACAAAGCC
GGCCATCTTC AAAGCGACTT TGATCTCGAC AATTTGCCCT CGCTGGCTTT CGCAGCCCGT
GCTTCGGCAT CTTATCCGGG TGCTTTTCCA CCGGCACAGC TGCGCGAAAT GGATGATCTC
CTGGCATCCC ACCACAAACC TTGGCCCGCA CGCTCACGCT TTCTTGCACG CAATTTCAGC
GGCTATCGTG ACCAGAGCAA GAACCCGGAG GAAGCCGTAC TGGTCGATGG CAGCATTCTG
GACAATAAGC CGATCATGGC AACCCTCGAA GCCATCCGCG CGCACAGCGC TTTTCGCGAG
GTGGATCGTC GTCTCGTTTA CATCGACCCG CATTCCCAGA TGGACAAAGC AGTTGCCAGC
AGCACTGTGC CGGGATTTTT CGCGACCTTG CGCGGGGCAC TCTCCGACTT GCCCCGCACC
GATCCGACCT ATAACGAACT GGCGGACGTC AGCCGTTACA ACAAGCAGGT GCGACGCCTG
AAGGAAACCA TTTATTACGC CAGAGCCGAG GTCGCGAAAT TGATCGAGCA AGCCACCGGG
GGGCGGATCA GCGGCAGTTT CAGCATCCAT GACTTGCGGC ACTGGCGCCT GACCTCCACC
AACCTCCTGG CTGGGACACC GATTGTCTAT GACTCGTACA TGCGCGCTCT TGCCCTGGAA
GGACTGGATT TCGTCGTCGA GCTGATCAAC GGCGCCTGCC ATTTCTCCAG GGATTCAGCA
CAGGCGCACA GGGTTCAGGA AAGCATCGAA CAATGGGCCA GGAATCAGGC GATTTTGCTA
TCCGACTCCT ACCGCATGCC GGAAAACGCC TACGAAAACA CCGATGTGCC CGCATTTGCG
AAAATTGTCA TCGACTTCGG GCTGGTCTAT AAAAAGAGAC GCCTGAATTT TGTTCTTCAT
GAGATCAATG CTCTCTATAC AAACACCTCG TTGATGGATT CCTGTTCGAC GGAACCCGAG
GATCTCGATC TGATAAAGAT CCAGATCCAC AAGCTCATCG ATGAAATGTC GATTTACGAC
GACAGCAGTT TCCTGAGTGG CCAGGCGATT GCCATGTGCC GCAAGCTATT CCTGGCAGAT
TTGGGACAAA TGGAAATCGA GCAGTTTGTC AGCGCCCATG ATTCCGCCAT CTCCAGCCTG
GTCAAGCGAC TCGGCATTGA ATGCGATATG GCCCGCAGAA ACGACGATGC GGACGCAGTG
CTGTCATCTT CGCTGGTGCT CAATCTTGAG CCCCGTTGCC GCAGCGCCAT TCTCTCTGGC
TATCTGGGCT ATTTCTACTG GGACATCATC CTTCGTCCCG TGGTGAACGC CCTGTCCCTT
GAAGCTGGAC CCATCGAGGA GATACTGATA GACCGCATCA GTCCGGACGA TTTCGTCAGC
CTGACAGTAC CAGACACGAC GAGGATGCTG CTGGGCGGAA CCTTTGCTGG CTTTGGCGGC
TTTCTCAGCC GCGCAACGCG TGAGAACGAC TATCTGTGGG GGCGGCTGCA TGCCGTGGAT
AGGCTGTTTG ACATTCTTGC CAGCACCGTA CCGGCGAATA CGCGGCACGA AATCAATTTT
CATGCCTTGA AGAAGGCTGC ATTTGAACGG GTGATCGAGG AGGAAGCCGG GCGGCTCAGG
CTGATTCCCG ACCTTGTGGC ACGGCTGCGC GATGCGATCT CCGCTCTCTG A
|
|---|
| Protein sequence | MKEKELRLAI VFFGGVSLAI YQHGINREIL NLIRASKLYH RNRLGEDSNV PSFRSRYPDE
PERSTGEVYL QCFSAIGQHL SLRVMVDVIS GSSAGGINGI ALARALAHDL SLAPLTDMWL
AEADMLKLLA PEAKARLWSK WIFWPFVRPL LARLHREGLF IGKIDAEMQE RVSVFLRSRW
FKPPLDGPRL AALVLDGLTA MERPEASTES LLPPGTRLDL LVTATDFRGL DRSIFIHDPP
MVKEREHRHL LRFRLDHDKA GHLQSDFDLD NLPSLAFAAR ASASYPGAFP PAQLREMDDL
LASHHKPWPA RSRFLARNFS GYRDQSKNPE EAVLVDGSIL DNKPIMATLE AIRAHSAFRE
VDRRLVYIDP HSQMDKAVAS STVPGFFATL RGALSDLPRT DPTYNELADV SRYNKQVRRL
KETIYYARAE VAKLIEQATG GRISGSFSIH DLRHWRLTST NLLAGTPIVY DSYMRALALE
GLDFVVELIN GACHFSRDSA QAHRVQESIE QWARNQAILL SDSYRMPENA YENTDVPAFA
KIVIDFGLVY KKRRLNFVLH EINALYTNTS LMDSCSTEPE DLDLIKIQIH KLIDEMSIYD
DSSFLSGQAI AMCRKLFLAD LGQMEIEQFV SAHDSAISSL VKRLGIECDM ARRNDDADAV
LSSSLVLNLE PRCRSAILSG YLGYFYWDII LRPVVNALSL EAGPIEEILI DRISPDDFVS
LTVPDTTRML LGGTFAGFGG FLSRATREND YLWGRLHAVD RLFDILASTV PANTRHEINF
HALKKAAFER VIEEEAGRLR LIPDLVARLR DAISAL
|
|---|
| |