| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0671 |
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| Symbol | |
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| ID | 4686743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 712620 |
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| End bp | 715037 |
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| Gene Length | 2418 bp |
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| Protein Length | 805 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639833665 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_980911 |
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| Protein GI | 121603582 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.152404 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTCTT CTGCTCAGAA ACCTGATTCC CGATCCAAAT CCAGCGCGGC AAAGCGGCCA
TCTTCCTGGT TGCGCTCCCT TGTGAAGTTC TTTCTGGGCA GCATTGGGCT GGTGCTGGCG
GTCATTGCTG GGCTGGCGAT TTTTCTGGCG GTTGCGCTGG CAGTGGCCTA TCCCAACCTG
CCGGATATTT CAGCCCTGTC AGACTACCGC CCCAAGCAGC CACTGCGGAT TTACACGGCA
GACAACGTGA TCATTGGAGA GTTCGGCGAA GAGCGCCGCA GACTCACGCC CATTGATGAA
ATTCCGCAAA TCATGAAAGA TGCGGTGCTG GCCATTGAGG ATGCACGCTT TTTCTCGCAT
GGTGGGGTTG ACTACCTGGG TGTTGTCCGG GCAGTTCTTG CCAATCTGGG CCGAGCAAAA
AGCCAGGGTG CCTCGACCAT CACCATGCAG GTCGCCCGCA ATGTCTACCT GACGGCCGAG
AAAAGCTATA CCCGCAAAAT TTATGAAATT TTGCTGACCT TCAAGCTGGA GCATTCCCTG
ACGAAGAACC AGATTCTTGA GATCTACATG AATCAGATTT TTCTGGGAAA TCGCTCTTAT
GGCTTTGCGG CCGCTTCGGA AACCTATTTC GGCAAGCCGC TCAAGGACGT CAGCATTGCG
GAAGCCGCCA TGCTGGCCGG CCTGCCAAAA GCGCCTTCGA CCTATAACCC CATCGCCAAC
CCCACCCGCG CCAAAACGCG TCAGCTCTAC ATCATTGAGC GCATGGAACA AAACGGTTTC
ATCACTGCCC AGCAGGCGAA AACAGCCAGG GAAGAAGAAC TTCAGATCAG GACGGGACGC
AATGCCGGGC GGGTGCATGC TGAATATGTG GCTGAAACCG TGCGCCAGCT GGTGTTTAGC
CAGTACGGCG AAGAAACCTA TACGCGCGGA CTGAATGTCT ATACCACCCT GAAATCCACC
GATCAGACCG TGGCCTACAA AGCCTTGCGC AAGGGCATCA TGGATTACGA ACGCCGGCAA
ATTTACCGGG GTCCCGAGAA ATTCATCGAC CTGCCGTCAA ACCCCCAGGA AACCGAAGAT
GCGATTGATG ACGCACTGGC CGACAACCCT GACAACGGCG ACATCATGTC TGCCGTGGTG
CTGGAAGCCA GTCCCAAACG GATCCTGGCG ATGCGCCTGA ACAGTGAAAA GGTCACCATC
ACTGGCGAAG GCCTGCGGCC TGCACAGTCG GGTCTGGCCG ACAAGGCTGG CCCGAACATC
AAAATTCGCC CCGGCGCACT GATCCGGGTG GTCAAAACGC CGAAGGATAC CTGGGAGATT
ACCCAATTGC CCGAAGTGGA AGGTGCCTTC GTGGCAATGG ACCCCCGGGA TGGGGCCGTG
CGCGCACTGA TAGGCGGATT TGATTTTGAA AAAAACAAGT TCAACCACGT CACCCAGGCC
TGGCGCCAGC CCGGCTCCAG CTTCAAGCCG TTTATTTATT CGGCAGCGCT GGAAAAAGGC
TTTACCCCGG CCACGGTGGT CAATGACGCG CCGCTGTTTT TTGATGCGGG TGTCACCGGC
GGCCAACCCT GGGAGCCCAA AAATTATGAC GGCGGCTTCG AAGGCCCGAT GAGCTTGCGC
ACAGCCCTGA AGAAATCAAA GAACCTGGTA TCGATCCGCA TCCTGCAGTC CATAGGCGCC
AAATACGGCC AGGAATGGGT CACGCGCTTC GGCTTCGACG CCGACAAGCA CCCCGCCTAC
CTAACCATGG CGCTGGGCGC CGGCTCGGTC ACGCCGATGC AGATGGCAAC CGGCTATTCG
GTTTTTGCCA ATGGCGGCTA CCGCGTCAAC CCTTACCTGG TCACGAAAAT CACCGACCAG
CGTGGCAAGA TACTGCTCGA AGTCACCCCA CCGGCGCTGA ACGAGTCGAT GCGGGGCATT
GATGCGCGAA ATGCTTTCAT CATGGACAGC CTGCTACAGG AAGTGGCACG CTCGGGCACG
GCGGCCAAAG CCCAGGCCAT GCTCAAGCGG CCGGATATTT TCGGCAAGAC CGGCACCACC
AACGATTCGA TTGATACCTG GTTTGTGGGT TTTCAGCCCA CGCTGGCGGC GGCCGTCTGG
ATGGGCTACG ACACACCCAA AAAACTCGGC GACCGCGAAA CTGGCGGCGG CTTGAGCCTG
CCGATCTGGA TCAATTTCAT GGAATATGCC CTCAAGGACG TGCCCGTCAC CGAATACCCG
CCACCTGAAG GCGTGGTGAA CCTCAATGGC GAGTGGTATT ACGACGAGTA CGCCAAAGGC
GCGGGTATCA GCAGCGTCGG CATGCAGCCA GACGCAGGAG CTTCCAGCAC GGAAACGGCG
CCTGGACCGG CTGGCGGTAT TCAGGTGTTG CCACCTTCCG ATGAGAAAAA ACGGATTCTG
GATCTTTTCA AGAACTGA
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| Protein sequence | MPSSAQKPDS RSKSSAAKRP SSWLRSLVKF FLGSIGLVLA VIAGLAIFLA VALAVAYPNL
PDISALSDYR PKQPLRIYTA DNVIIGEFGE ERRRLTPIDE IPQIMKDAVL AIEDARFFSH
GGVDYLGVVR AVLANLGRAK SQGASTITMQ VARNVYLTAE KSYTRKIYEI LLTFKLEHSL
TKNQILEIYM NQIFLGNRSY GFAAASETYF GKPLKDVSIA EAAMLAGLPK APSTYNPIAN
PTRAKTRQLY IIERMEQNGF ITAQQAKTAR EEELQIRTGR NAGRVHAEYV AETVRQLVFS
QYGEETYTRG LNVYTTLKST DQTVAYKALR KGIMDYERRQ IYRGPEKFID LPSNPQETED
AIDDALADNP DNGDIMSAVV LEASPKRILA MRLNSEKVTI TGEGLRPAQS GLADKAGPNI
KIRPGALIRV VKTPKDTWEI TQLPEVEGAF VAMDPRDGAV RALIGGFDFE KNKFNHVTQA
WRQPGSSFKP FIYSAALEKG FTPATVVNDA PLFFDAGVTG GQPWEPKNYD GGFEGPMSLR
TALKKSKNLV SIRILQSIGA KYGQEWVTRF GFDADKHPAY LTMALGAGSV TPMQMATGYS
VFANGGYRVN PYLVTKITDQ RGKILLEVTP PALNESMRGI DARNAFIMDS LLQEVARSGT
AAKAQAMLKR PDIFGKTGTT NDSIDTWFVG FQPTLAAAVW MGYDTPKKLG DRETGGGLSL
PIWINFMEYA LKDVPVTEYP PPEGVVNLNG EWYYDEYAKG AGISSVGMQP DAGASSTETA
PGPAGGIQVL PPSDEKKRIL DLFKN
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