| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0612 |
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| Symbol | |
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| ID | 4686285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 645800 |
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| End bp | 647002 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639833606 |
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| Product | branched-chain amino acid ABC transporter periplasmic substrate-binding protein |
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| Protein accession | YP_980852 |
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| Protein GI | 121603523 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.915059 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCATTC GAAAAATTTC GCACGGCGTG GTGGCGACCG GGCTCGCCGC TTTTGCATGG
GTACAGGCTG GCAGCGCGGC CGCAGCGCTG GAGCCGGCGC CGATCAACAT CGGTGCGATC
AGCACGCTGA CGGCCGGACC GGCCGACTTT GCGTCATCCG GACTGGCCGC CAAGGCGGTG
TTTGACAGCG TCAACGCAAC AGGCGGCATC CAGAGGCGAA AACTGGTGTT TATCCAGGAG
GACGACCACG GCAATCCCGC CGCTGCGGCA GAGGCGGCGG CACGGCTGAT CAATGGCGCA
AAGGTTGTGG CGCTGGCTGG CGGGGCCAGT TTTCTGGAGT GTTCGGTCAA TGCCCGCACC
TACCAGCAGG CCGGCCTTGC CTCTGTTCCG GGGCTGGGAC TGGACAGCCA TTGTTTCAAC
ACGCCGATGA TTGCACCCGT CAATACCGGG CCTTACATGC AACTCACCCT GGCGATGCAC
TATGTCGCCG ACAAGCTCAA GAAAAAGCGT CTGTGTGTGT TGCGCCTTGG CACACCTGCC
AATGTGCAGA AGACCCTGGA CGGTGTCTTG CAGGAATGGA CGGAAAAGAC GGGCAACAAA
CCGGTGCTTG ACGAGCGCGA CATTCAGCCC GGGGACAGCC CCGAGCCTTA TTTCAAAAAG
GCCAGCCAGG CGGGCTGCGA GGCGATTGTG TTTGCCGGGA CGGAAGATTT TTCGGTGCGT
TTTGCCAGTG TGGGCAAAAA AATGATGCCG GGCAACATTC CCCTGGTGTT TCAGGGCGCG
GTCTATACAA GCCAGGCCGC CGAGACATTG GGCCGCGATG GTGATGGCAT CTATGCCATG
TCAGAGTTCG AGCCCTGGTC CAGTCGTTCC GGCCAGTTGA GTCACTGGCG CAACCTGATG
ATTGCCAATC AGGTCTCCCT GACATCCTCT TCGCAGGGCG GTTATCTGGC GGCGCAGATT
CTGGTGAAAG CGATGCGCAG CATCAAGGGC GAGATTACCC GCGAATCGGT CACCCGGGCC
TTGCAGCAAA TGCCACCCTA CGAACTCCCC ATGCTGGGCA TGCCTTTTTC CTTTGGCGAG
GGCCGGGCGC ATCATCCCAA CCGGGCGGCC ATTCCGGTGC AGTTGCTCGA CGGTCGCTGG
CGCATCGCTC ACCATGAATG GCTCAAGCCT TTTTATCCCG GCGTGCTTGT GTCTGCTCCG
TGA
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| Protein sequence | MSIRKISHGV VATGLAAFAW VQAGSAAAAL EPAPINIGAI STLTAGPADF ASSGLAAKAV
FDSVNATGGI QRRKLVFIQE DDHGNPAAAA EAAARLINGA KVVALAGGAS FLECSVNART
YQQAGLASVP GLGLDSHCFN TPMIAPVNTG PYMQLTLAMH YVADKLKKKR LCVLRLGTPA
NVQKTLDGVL QEWTEKTGNK PVLDERDIQP GDSPEPYFKK ASQAGCEAIV FAGTEDFSVR
FASVGKKMMP GNIPLVFQGA VYTSQAAETL GRDGDGIYAM SEFEPWSSRS GQLSHWRNLM
IANQVSLTSS SQGGYLAAQI LVKAMRSIKG EITRESVTRA LQQMPPYELP MLGMPFSFGE
GRAHHPNRAA IPVQLLDGRW RIAHHEWLKP FYPGVLVSAP
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