| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0602 |
|---|
| Symbol | |
|---|
| ID | 4688365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 634463 |
|---|
| End bp | 635125 |
|---|
| Gene Length | 663 bp |
|---|
| Protein Length | 220 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639833596 |
|---|
| Product | GntR family transcriptional regulator |
|---|
| Protein accession | YP_980842 |
|---|
| Protein GI | 121603513 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1802] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0180782 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.364212 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCACG CAAGAAACAC GGCCTACGAA GTCCTGAGGC AACGCCTGGT CGGTGGCCAC
TACAGCCCTG GATCGCAACT CAAAGAGGAG CCGCTGGCGC GGGAACTGGG GGTGAGTCGC
ACACCGGTGC GGACCGCGCT CAAGCGATTG GTTGAGGAAG GTCTCGCCAC CGATGCCATC
GGGCAAGGCA TCCATGTCGC CAAGTGGAGC GAATGGGATA TCGAAGAGAC GTTTCAGCTG
CGGATGCTGC TCGAACCCTA TGCTTCGTAC CTGGCGGCGA CGCGCGGGGG CGACGAGCTT
GTCGGCCGGC TTGAGTCGAG CAATGAGGAG ATGGCCGCCG CCATCAAGGC GGGAGGGGAC
GATGCCATCG CCAGGGTTCA AGAGGCCAAT CGCAGCTTTC ACCGGGCGCT GCTCGATGCT
GCGGGATCGC CGCGCTTGCG CTCGATGCTC GACACCATCA TCGACATGCC GATCCTCGTG
CGCTCGTTCT ACCTCTACAC GCCTGCAGAA CTGGAGCAGA GCCTGCACCA TCATCGCGAC
CTGACCCTTG CGGTAGCGGC GCGCGACGGC GAACTCGCGC GCCAGGTCAT GCAGCTGCAT
TTGCGGATGT CCTACCACCG ATTCATGCAG CATCGCAGCG AGTACGCTCG CAGCCGCCGC
TAA
|
|---|
| Protein sequence | MQHARNTAYE VLRQRLVGGH YSPGSQLKEE PLARELGVSR TPVRTALKRL VEEGLATDAI
GQGIHVAKWS EWDIEETFQL RMLLEPYASY LAATRGGDEL VGRLESSNEE MAAAIKAGGD
DAIARVQEAN RSFHRALLDA AGSPRLRSML DTIIDMPILV RSFYLYTPAE LEQSLHHHRD
LTLAVAARDG ELARQVMQLH LRMSYHRFMQ HRSEYARSRR
|
|---|
| |