| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0413 |
|---|
| Symbol | |
|---|
| ID | 4686795 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 422891 |
|---|
| End bp | 424816 |
|---|
| Gene Length | 1926 bp |
|---|
| Protein Length | 641 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 639833406 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_980657 |
|---|
| Protein GI | 121603328 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00715783 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.000000249616 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTCA TTACCCTTCT GGACGCTCAA CTCGCTTTTG GGCACGTCGC TCTGCTGGAC
CATGCAGATT TTTCCCTTGA AACCAACCAG CGTATCGGCC TGATTGGCCG CAACGGCACG
GGCAAATCGT CCTTGCTCAA GATCCTCGCC GGACTGGAAA AACCCGACGA TGGCACCCTG
CAACTGCAGC AAAACCTGCG CATCGCCTAC GTGCCGCAAG AACCCAGCCT AGACCCGCAC
GCTACGGTTT TCATAGCTGC GAGCGCAGGA CTCGCGCGCA CAAAGCATGT AGTTGAGCTT
TACCTTGCGG CCGACGAGCA TACCGACCTG GATGCGCTGC AATCTGAAAT CGAAGCGCTG
GACGGCTGGA CCTGGGAGCA GCGCGTTGAA GAAACCCTGC ACCGCTTGCA CCTCGATAAA
GACGCCATCG TCGGCTCGCT CTCGGGCGGC ACCAAGAAGC GCGTGGCACT GGCCCAGGCG
CTGGTCGCCA AGCCCGACGT GCTGCTGCTC GACGAGCCGA CCAACCACCT GGACCTGGAT
TCGATTGCAT GGCTGGAAGA GTTACTGGTC AATTTCAACG GCAGCATCAT CACCATTACC
CATGACCGGT CCTTTCTGGA CCAGGTGGCG AATGTCATCG TCGAACTGGA TCGCGGCAAG
CTGCGCAGCT ACCCCGGCAA TTTTGCCCAG TACCTGATCC AGAAGGAAGA CCAGATGGCG
CAGGAAGCCG TCATCTTCGC CAAGGCCGAC AAGCTGCTGG CACAGGAAGA AGTGTGGATT
CGCAAGGGCG TGGAGGCGCG CCGCACGCGC AGCACCGCAC GCATCGGCCG GCTCGAAGCA
TTGCGTGAAA ACCGCTCGGC CCGGCGCGAT GCCGTCGGCC GCGTCAACCT GGACGTGTCC
AGCGGCGACA AGAGCGGCAA GATAGTTGCC GAACTCACCG ACGTGTCGAA AAGCTTTGGC
CATCCGGGCG CCGAAAAGAC CATCGTCAGC CATTTCAGCG CCACCTTGCT GCGCGGCGAC
AAGGTCGGCC TGCTCGGCCC CAACGGCGCA GGCAAAAGCA CGCTGCTCAA GCTCATTTTG
GGTGAACTGC AGCCCGACGC GACCACGCCG CCGGGCAAGA TCCGCCAGGG CGCGAACCTG
CAGGTGGCCT ACTTCGACCA GATGCGCGAC GCGCTGGACC TGGACGCGAC GCTGGAAGAC
TTCATCAGCC CCGGCAGCGA ATGGGTCGAG ATCAACGGCC AGAAAAAGCA CGTCAAGAGC
TACCTGACCG ACTTTTTGTT CTCGCCCTCA CGCGCCAACT CGCCAGTGCG CACGCTGTCG
GGCGGCGAGC GCAACCGTCT ACTGCTGGCG CGCCTGTTTG CGCGGCCCGC CAATGTGCTG
GTGCTCGACG AGCCGACCAA CGACCTGGAC ATCGACACGC TGGAACTGCT CGAAGACCTG
CTGCAAAACT ACGAAGGCAC GGTGTTCCTG GTCAGCCATG ACCGGCGCTT CCTGGACAAC
GTGGTGACCA GCACCATCGC CTACGAAGGC ACGCCGGACA ACCCCGGCTT CTGGCGCGAA
TACGAAGGCG GCGTGACGGA CTGGCTCACG CAGTCGAAAC GCGCTGCGCA AATTACCGGC
AGCAACAAAG CTCCGGCAGC CTCCAGCACA AAAAATACAG GCAAAAATGC TGTCGAGCCC
AATAAGGATA TACGCGAGCA GCTATCAAAA AAGAAGCTAA GTTACAAAGA GCAGCGTGAA
CTCGATGGCT TGCCGGCGCT GATTCAGCAG CTCGAATCGC AGCAAAAGGC GATTGGGCAG
GAACTCTACG ACGGCACGCT CTACGCCAGC AATGCCAAAC GGGCGGCAGA ACTGACTGCG
CGCAACGCCA AGCTGGAGGA AGAACTCATG GAAGCCCTGC AGCGCTGGGA AACGCTCTCC
GCCTGA
|
|---|
| Protein sequence | MALITLLDAQ LAFGHVALLD HADFSLETNQ RIGLIGRNGT GKSSLLKILA GLEKPDDGTL
QLQQNLRIAY VPQEPSLDPH ATVFIAASAG LARTKHVVEL YLAADEHTDL DALQSEIEAL
DGWTWEQRVE ETLHRLHLDK DAIVGSLSGG TKKRVALAQA LVAKPDVLLL DEPTNHLDLD
SIAWLEELLV NFNGSIITIT HDRSFLDQVA NVIVELDRGK LRSYPGNFAQ YLIQKEDQMA
QEAVIFAKAD KLLAQEEVWI RKGVEARRTR STARIGRLEA LRENRSARRD AVGRVNLDVS
SGDKSGKIVA ELTDVSKSFG HPGAEKTIVS HFSATLLRGD KVGLLGPNGA GKSTLLKLIL
GELQPDATTP PGKIRQGANL QVAYFDQMRD ALDLDATLED FISPGSEWVE INGQKKHVKS
YLTDFLFSPS RANSPVRTLS GGERNRLLLA RLFARPANVL VLDEPTNDLD IDTLELLEDL
LQNYEGTVFL VSHDRRFLDN VVTSTIAYEG TPDNPGFWRE YEGGVTDWLT QSKRAAQITG
SNKAPAASST KNTGKNAVEP NKDIREQLSK KKLSYKEQRE LDGLPALIQQ LESQQKAIGQ
ELYDGTLYAS NAKRAAELTA RNAKLEEELM EALQRWETLS A
|
|---|
| |