| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0345 |
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| Symbol | |
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| ID | 4688858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 341683 |
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| End bp | 342675 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639833337 |
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| Product | DNA-directed RNA polymerase subunit alpha |
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| Protein accession | YP_980589 |
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| Protein GI | 121603260 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.534692 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000171043 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGACTA ATTTGTTAAA ACCAAAAACT ATCAATGTTG AGCAGCTTGG CGCAAACCGC
GCCAAGGTGA CTCTCGAGCC TTTTGAGCGT GGTTACGGCC ATACGCTGGG CAACGCGCTG
CGTCGTGTAC TGCTGTCATC CATGGTGGGC CATGCTGCAA CTGAAGTGAC TATCGCCGGT
GTTTTGCATG AGTACTCTTC CATTGACGGT GTCCAGGAAG ATGTTGTCAA CATCCTGTTA
AACCTCAAGG GTGTAGTCTT CAAACTACAC AACCGCGATG AAGTGACTTT GAGCCTCCGC
AAGGATGGCG AAGGTCCGAT CACTGCGGCT GATATCCAGA CGCCTCATGA TGTTGAAATT
GTCAACCCTG ACCATGTGAT CATGAACTTG TCGCACGGCG GCAAGATTGA CATGCAGATC
AAGGTCGAGA ATGGTCGCGG CTATGTGCCG GGTAACGTCC GCCGTTATGG TGACGAGTCG
CCAAAGTCGA TTGGCCGCAT TGTGCTCGAT GCTTCTTTTT CTCCGGTCAA GCGCGTCAGC
TACACCGTTG AAAGTGCCCG CGTTGAGCAG CGTACGGATC TGGATAAACT GGTTCTGGAA
ATTGAAACCA ATGGCGCAGT AACTGCAGAA GACGCGGTTC GTGCATCAGC CAAGATACTT
GTTGAACAAC TGGCTGTATT TGCCCAGTTG GAAGGCAATG AATTGGGCGC AATCATCAAT
GATCCGGCGC CTCGCAGTTC GCAGCAATTC GATCCCATTC TGCTGCGCCC AGTCGATGAA
CTCGAACTCA CGGTGCGTTC GGCAAACTGC TTGAAAGCAG AAAATATTTA CTACATTGGC
GATCTGATCC AGCGCACCGA AAATGAGCTG CTCAAGACTC CCAATCTGGG ACGGAAATCT
CTCAACGAGA TCAAGGAAGT ATTGGCCTCT CGCGGCCTGA CACTGGGAAT GCGTCTTGAA
AGCTGGCCTC CTGCCGGCCT TGACAAGCGC TGA
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| Protein sequence | MQTNLLKPKT INVEQLGANR AKVTLEPFER GYGHTLGNAL RRVLLSSMVG HAATEVTIAG
VLHEYSSIDG VQEDVVNILL NLKGVVFKLH NRDEVTLSLR KDGEGPITAA DIQTPHDVEI
VNPDHVIMNL SHGGKIDMQI KVENGRGYVP GNVRRYGDES PKSIGRIVLD ASFSPVKRVS
YTVESARVEQ RTDLDKLVLE IETNGAVTAE DAVRASAKIL VEQLAVFAQL EGNELGAIIN
DPAPRSSQQF DPILLRPVDE LELTVRSANC LKAENIYYIG DLIQRTENEL LKTPNLGRKS
LNEIKEVLAS RGLTLGMRLE SWPPAGLDKR
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