| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0144 |
|---|
| Symbol | |
|---|
| ID | 4690108 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 153605 |
|---|
| End bp | 155980 |
|---|
| Gene Length | 2376 bp |
|---|
| Protein Length | 791 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639833137 |
|---|
| Product | fimbrial biogenesis outer membrane usher protein |
|---|
| Protein accession | YP_980390 |
|---|
| Protein GI | 121603061 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACGC CGCTGTCCGC CGAATCAGCG CCCGCCCCTC GGCTCCCTCC TGTCACGCGC
CGCGTGGCGC CGGGCCAAGG CAAAAAGAAT GCCCAGAAAC CGCAAGCGCC GCAGCCCGAA
GTGCTGCTGC TCGACGTGCG CATCAACAGC CAGCCCCTGG CCGATGTGGT TCGCGTCGAG
CAGTGGCCCG ATGGCGCCTT GCTGCTGCCG GCCGAAGCCT GGGCCGAGGC GCGCCTGAGC
CCGCTGGCGC AAGCCCGCGC GCTGAGCGAC GGCACGCCGG CCTACGCGCT TAACACCGTA
CCCGGCACGA CCTACCGCAT CAACCGCCAG AGCCTGAGCC TGGAGATCAA TGCGCCGGCC
AGCGCCTTTG TCGGCTCCAC GCTGGCGCTG CAAGGCGCAC AAACCGAGCC GCCGCCGCGC
CCGCAGCCCG GCGTGCTGCT CAACTACGAC CTGTCGGTGG CGCACGGCGG CAGCGGCGGG
CCGCTCACCA GCGGCGCCCT GCTCGAAGCG GTGGTCTTCA GCCGCTTTGG CAATCTGGTG
AGTTCGGCGC TGGTGCTTGA TGACGGCCTC CGCCGCCACG CAACCCGGCT CGACACCTTC
TGGCGCTACG ACCTGCCGCA GCGCATGGAA ACGCTGGTGG TGGGCGATGC CGTGGGCGTG
GGCGGCGGCT GGAGCCGGCC GGCGCGCTAC GGCGGCATTC GCTGGGGCCG CGACTTTGGC
ATGCGGCCGG GCTTTGTCAC GCTGCCGCAA CTCACGCTGA ACGGCGAGGC GGCTTTGCCT
TCGACCGTGG AGGTGCTGGT CAACAATGCG CGCCGCCTGA GCCAGCCGAT GCCCTCCGGC
CCGTTTGAAC TGAGCAACGT GCCCATCGTC ACCGGGGCGG GCGAAATCAA CCTGGTGGTG
CGCGACCTGC TGGGGCGGGA AACGGTGATC CGGCAGAGCT ACTACGCCTC GCCGCGCCTG
CTGGCGCCGG GACTGAGCGA TTTTTCGTTT GAAGCAGGCT GGCTGCGCAC CGGCTACGGG
GAAAGCAGCG CCTATGGCGA CAGCTTTGGC GCCGCCACCT GGCGCCAGGG ACTGAGCCGC
AGCTTGACGG GCGAGGGCCG TGTGGAACTA CAGGCCAAGC GCCGCGCCGC CGGTGTGGAG
CTGGCCGGCT TGCTGGGCGA CTGGGCCGCC GGTCGCGTGG CGCTGGCCGC GTCCAACAGC
AGCACGCAAG GCATGGCCGA GCACGGCCAC TTGCTGCAAC TCGGCGTGGA GCGCAGCACG
CCACGGGGAG GCGGCGCGCT GCAGTACGAA CACGCCAGCC GGGGTTTCGC GCCCTTTGGC
GAAGCCATCG GCCCGATGGC GGTGGCGCAA CGCGCCCGCG CCCGCTGGCT GGCCAGCTTG
GGGGGCGCCG TGTGGGGGCC GGTCAGCGGT GGTTTGAGCT ATGTCAGCCA GACGCGCTGG
GACGGTGACC GGGTCAAGAC CGCAGGCCTG TCGTTCAACC TGCCGCTGTG GCAGCGTGCC
AGCCTGAGCC TGTCGCTGAA CAAGCGGCTC GATGGCGATG GCGCCTGGCG TGCGGGCCTG
AGCCTCAGCC TGCCGCTGGA CAATGGCATC AGCACCAGCG CGCGCGTGGA AACGGCCAGC
AGCAGCCGGG CGACGGGCGC GGTTTCGGCG TCACGCAATC CGCCGGCCGG GCCGGGGCTG
GGCTGGCGGG TGGAAGGCTC GACCCAGGAA AGCCAGCGCG CCCGTGGCGG GGTGCAGTAC
AACACCAGCC AGGCCGAGTT TGCCGCCGAT GTGGTCAGTG ATGCCACGGG CCAGCTGGCC
GTGCGCGCCG GCGCCCGTGG CACGCTGGGC CTGCTGGCGA GTATGCCGTT TGCGTCGCGC
GCCGTCGGGC AGGGCAGTTT TGCCGTGGTG GACGCTGGCG GCCTGGCGGG CGTGCCGGTC
ATGCGCAGCC ACCAGGTCGT GGCCGTGACG GATTCGCGCG GCCTGGCCTT TGTGCCGGGC
TTGCTGCCGT GGCAGCAAAA CCAGATCGAG ATCGACCCGG TGGACCTGCC GCTCGACGTG
GAGGTGGGCA ACATGGTGCA GCAGGTCACG CCCTACCCCG GCAGTGGCTC GGTGGTGATG
TTCGCGGTGC GCCGCACGCG CCAGGCGCTG GTCGTGCTGC ACCAGCCGGA TGGTGCGCCA
GTGCCGGTGG GCAGCAAAGT GCGCCTGCTG CCTGACGGCC CTGAATTCAT GGCCGGCCGG
CGCGGCGAGG TCTGGCTGAC CGACCTGGCC GCTGAACGCC AGCGCCTGCA GGTACGCTGG
CCCGGCGACG GCTGCGAACT CGAACTCATG GTGCCGGCCG CCGCGGACGG CGCAACGCCT
GGAAAAATCG GGCCGCTGGC CTGCACAAAG GAATAG
|
|---|
| Protein sequence | MDTPLSAESA PAPRLPPVTR RVAPGQGKKN AQKPQAPQPE VLLLDVRINS QPLADVVRVE
QWPDGALLLP AEAWAEARLS PLAQARALSD GTPAYALNTV PGTTYRINRQ SLSLEINAPA
SAFVGSTLAL QGAQTEPPPR PQPGVLLNYD LSVAHGGSGG PLTSGALLEA VVFSRFGNLV
SSALVLDDGL RRHATRLDTF WRYDLPQRME TLVVGDAVGV GGGWSRPARY GGIRWGRDFG
MRPGFVTLPQ LTLNGEAALP STVEVLVNNA RRLSQPMPSG PFELSNVPIV TGAGEINLVV
RDLLGRETVI RQSYYASPRL LAPGLSDFSF EAGWLRTGYG ESSAYGDSFG AATWRQGLSR
SLTGEGRVEL QAKRRAAGVE LAGLLGDWAA GRVALAASNS STQGMAEHGH LLQLGVERST
PRGGGALQYE HASRGFAPFG EAIGPMAVAQ RARARWLASL GGAVWGPVSG GLSYVSQTRW
DGDRVKTAGL SFNLPLWQRA SLSLSLNKRL DGDGAWRAGL SLSLPLDNGI STSARVETAS
SSRATGAVSA SRNPPAGPGL GWRVEGSTQE SQRARGGVQY NTSQAEFAAD VVSDATGQLA
VRAGARGTLG LLASMPFASR AVGQGSFAVV DAGGLAGVPV MRSHQVVAVT DSRGLAFVPG
LLPWQQNQIE IDPVDLPLDV EVGNMVQQVT PYPGSGSVVM FAVRRTRQAL VVLHQPDGAP
VPVGSKVRLL PDGPEFMAGR RGEVWLTDLA AERQRLQVRW PGDGCELELM VPAAADGATP
GKIGPLACTK E
|
|---|
| |