Gene Pnap_0100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0100 
Symbol 
ID4687066 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp106815 
End bp107771 
Gene Length957 bp 
Protein Length318 aa 
Translation table11 
GC content68% 
IMG OID639833093 
ProductLysR family transcriptional regulator 
Protein accessionYP_980346 
Protein GI121603017 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.183121 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.148828 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCCCTC CCAATTTCCG CACCCTGGAC CTCAACCTGC TGCGTGTTTT TGACGAGGTC 
ATGGCCGAGC GCAGCCTCAC GCGGGCGGCG CGCAACCTGT CGCTGACGCA GCCGGCCGTC
AGCAATGCCC TGCGCCGGCT GCGCGAGACG CTGGGCGACG ATCTGGTGCA GCGCAGCGGC
CAGGGCATGG CGCCCACGCC ACGCGCGGTG GTGATCTGGC CGGCCGTGCG CGAGGCCCTG
CGGCAGCTGC AGGCGTCGCT GATTCCCAAC GAGTTCGTTG CCGCCGAGGC GACGACCGCC
TTTGTGCTGG CCATGGCCGA CGCGACGGCG GCCGAACTGA TCCCGGGCCT GAGTGAAATC
CTGGAGCGCG AAGCCCGGGG CGTGAGCATC CGGGTGCTGC CGCTGACCAC GCGCGACCCC
AGGCGGATGC TCGACGAGCA AGCCTGCGAT CTGGCGGTCG GCTATTTCCC GTCGGTGGTG
CCCGACCTGA CGGCCAAGGA GCAGAACGGC GAGGCGATGC CGTTTTTCTT CCAGCGGCTG
TACGATGGCG AATATGTCTG CGTGATGCGC AAGGACCATC CGCTGGCTGG CGGCGTGCTG
AGCCTGGACG ACTTTTGCAA CGCCCGCCAC ATGCTGGTGA GTTTTTCCGG CCGGCCTTAC
GGGTTCATCG ACGAATCGCT GGCCGCGCTC GGCCGGGAGC GGCGGGTGGT GCTGACGGTG
AACCAGTTCT TCACCGCCGG CCAGGTGGTG GCCCATTCCA ACCTGCTGAC CGTGCTGCCA
CGGCATTTTG TACGGGTGAC CGGCATTGCC GAGCAACTGG CGCTGCAGAC CCTGCCGTTT
GCCGTGTCGC CGGTGCATGT CGATTCGCTA TGGCACCGTC GCTCCGAGCA GCGCAGCGCG
CATGTCTGGC TGCGCCAGGC GATCCTGCGG GCGGCCGAAA AGGCTTTTTC GATCTGA
 
Protein sequence
MTPPNFRTLD LNLLRVFDEV MAERSLTRAA RNLSLTQPAV SNALRRLRET LGDDLVQRSG 
QGMAPTPRAV VIWPAVREAL RQLQASLIPN EFVAAEATTA FVLAMADATA AELIPGLSEI
LEREARGVSI RVLPLTTRDP RRMLDEQACD LAVGYFPSVV PDLTAKEQNG EAMPFFFQRL
YDGEYVCVMR KDHPLAGGVL SLDDFCNARH MLVSFSGRPY GFIDESLAAL GRERRVVLTV
NQFFTAGQVV AHSNLLTVLP RHFVRVTGIA EQLALQTLPF AVSPVHVDSL WHRRSEQRSA
HVWLRQAILR AAEKAFSI