Gene Pnap_0091 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_0091 
Symbol 
ID4686429 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008781 
Strand
Start bp93497 
End bp96289 
Gene Length2793 bp 
Protein Length930 aa 
Translation table11 
GC content64% 
IMG OID639833084 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_980337 
Protein GI121603008 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase
[COG0784] FOG: CheY-like receiver 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00954137 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.993222 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAAACCC AGATGCGGGC GCATGACTGG TCCACCTCCG GGCTGGGCAG TCCTGCTTCC 
TGGCCGCAGC CGCTCAAGAC GGTGGCCGGC CTCATGCTTC ACTGCAGAAC GCCGGTGTTT
CTGGCCTGGG GGCCGGAGTT GAGCCTTTTG TACAACGATG CCTACCTGGA CATTCTTGGA
GAAAGGCACC CGGCGGCGCT GGGCCGGCCT TTGTACGAGG CCTGGGCCGA AATCCGGGCC
GAGATCGAAC CGCTGGTCAA CCAGGCATTG TCCGGCGAGC CTGTCTATTT TGAAGATGCT
GTTTTTACCC TGCGACGCAA GGGTGCGGAC GAACAGGCCT GGTTCAGCTT TTCGTATGCG
CCTGTCGATG GCCCGGACGG CACGGTTGCC GGGCTGTACT GCAACCTGAC GGAAACAACG
GCCAAGGTGC TGGCGGAAAA AAACCGGCAG GCGGAAACCC GTCGGCTTTA CAGCCTGTTT
GAACAGGCGC CGAGTTTCAT GGCCGTGGTG CACGGCTCCA GCCATGTCTA TGAACTGGCC
AATAGCGCCT ACCTTCGGAT GGCGGGGTGC CAGGATCTGG TCGGCAAAAC ATTCCGTGAG
GCAGTCCAGG GCATTGAAGA CCAGGGCTAT GTCGCGCTGC TGGATCAGGT CTATGCCACG
GGCCAGCCAT TCATTGGCAA CCGGATGCCG GTCATCTTTT CGCGTCACGC CGACGGGCCA
CCCGAGCAGT GCTTCGTGGA TTTTATTTTT CAGCCCATCA CCGCTCCGGA TGGCGTGGTC
AACGGCATTT TCATTGAAGG CAACGACGTC ACGGAGCAGG TCCGCACCGA GGACGATCTG
CGCAAAAGCA GAATCGCCGG CCTGGAGACG GCCCAGCAGT TGAACGCTTT GCTGCAAGCC
GCGCCAGTGG CCATCGTGAT GGCGGACATG CACGGAAAAC CCCTGCGCTT CAATCCGGCC
AGCCGCCAGC TCTGGGGCGA CCATCCGGCG TCGGAAAGCA TTGCCGGCTA CGCTGAGCGC
AAAGGCTGGT GGGCTGACGG CTCGGTCCGG CATGGCTGCC GGCTTGAAGC GCACGAATGG
GCGCTGGCCC GCGCCCTGCA AGGCGAGGAA GCACCGCGCG ACACCGTCGA GATAGAACCT
TTCGGCAAAC CCGGCATTCG CCGGACCATC CTGAACTGCG GCGCGCCGGT GCGAAACCTG
GACGGAGACA TCATCGGCTC CGTCGCCGCC CAGATGGACA TCAGCGACCG CGTCGCCATC
GAAGCCGCGC TGCGCGAAAC CGTGACCCAG TACCGCACCA TCACCAATGC CATACCGCAG
ATCGTCTGGG CCACGCGTCC CGACGGCTAC CACGACTACT TCAACCAGCA GTGGTACGAC
TACACCGGCG TTCCCCAGGA CTCCACGGTC GGGGAAGGAT GGAAGGGGCT GTTTCATCTT
GAGGACCAGC TACAGGCGGC CAAAAACTGG CGGCACAGCC TGGCCACCGG CGAACCCTAC
GAAATCGAAT ACCGCCTGCG CCACCACTCC GGCCAGTACC GCTGGAACCT GGGCCGGGCG
CTGCCGGTTC GCAACGAACA AGGCGCCATC GTCCGGTGGA TGGGAACCTG CACCGATATT
CATGAACAAA AGCTGGCGCA GGAGGGCTTG CTGCAGGCCG ACCGGCTCAA GGACGAGTTC
CTGGCCATGC TCGCCCACGA ACTGCGCAAC CCCCTGGCGC CGATTGCGAC GGCTGCGCAC
CTGCTGTCCA CGGGCACGCT GGACCCTGAA GGGCTGTCGC GATTGAGTGA AGTGATTTCA
CGCCAGGCCG GGCACATGAC CCGCCTGATT GATGATTTGC TGGATGTGTC GCGCGTCACC
TGGGGCCAGG TCACGCTGGA CAAAAATCCG CTGGACATGA ACAGCATCGT CACCGAGGCG
GTCGAGCAGG TCAGGCCCTT GCTGCAGGCC AAGTCGCAGC ATCTGGACAT CCAGCTGTCT
CCGCAACGCA ACCTGGTTTC GGGCGACCGG ATGCGGCTGG TCCAGGTGCT GGCCAATGTG
CTCAACAACG CCGTCAAGTA CACGCCCGAC GGGGGCCGCA TCACCCTTCG CGTGGTCGAG
GACGACAGCC ACCTGACGGT TTGCGTGCGC GACAACGGCA TCGGCATGTC CCGCGAGCTG
CTGGCCATCG CCTTTGAGCT GTTCACCCAA GGCGAAAGAA CCTCCGACCG CACCCAGGGC
GGGCTGGGCA TCGGCCTGGC CCTGGTCCAG ACCCTGGTTC ACCTGCATGG CGGAACGGTC
AGGCTGCACA GCGAAGGAGC CGGACTGGGC AGCGAGTTGA CGATGGTCCT GCCGCGCCTG
CCGCAGGACG ACGGGCCGCG CCGTTTCGAT GCCGGCGATG CCTTGGCCGT GCCGGCCCGC
GAATCGCTGC GCGTCATGGT GGTCGATGAC AACGTCGATG CCGCGCGGCT GCTGGGCATG
TTCGTCGAAC TGCTGGGGCA CGAGGTTTTC GTGCAGTTCC ACCCGGCCAG CGCCATTGAA
TGCGCGCACC AGGTGCAGCC CGACATCTGC CTGCTCGACA TCGGCCTGCC CGACATGGAC
GGCTACACGC TGGCGCGGCA GTTGCACCGG ATACCCGGCA TGGAAAACAC CGTACTGGCG
GCGGTCACCG GCTACAGCCA GCCCAGGGAC AAGCAGGCCG CGTTCGCCGC CGGCTTCAAC
TTTCACTTTG CCAAGCCCAT CAGCGCGCAG CAGCTGGAGT CGTGGCTGGC CGATGTGACC
AGGGGCCGGG AAAGCCTGTC AGCCAGCCCC TGA
 
Protein sequence
MQTQMRAHDW STSGLGSPAS WPQPLKTVAG LMLHCRTPVF LAWGPELSLL YNDAYLDILG 
ERHPAALGRP LYEAWAEIRA EIEPLVNQAL SGEPVYFEDA VFTLRRKGAD EQAWFSFSYA
PVDGPDGTVA GLYCNLTETT AKVLAEKNRQ AETRRLYSLF EQAPSFMAVV HGSSHVYELA
NSAYLRMAGC QDLVGKTFRE AVQGIEDQGY VALLDQVYAT GQPFIGNRMP VIFSRHADGP
PEQCFVDFIF QPITAPDGVV NGIFIEGNDV TEQVRTEDDL RKSRIAGLET AQQLNALLQA
APVAIVMADM HGKPLRFNPA SRQLWGDHPA SESIAGYAER KGWWADGSVR HGCRLEAHEW
ALARALQGEE APRDTVEIEP FGKPGIRRTI LNCGAPVRNL DGDIIGSVAA QMDISDRVAI
EAALRETVTQ YRTITNAIPQ IVWATRPDGY HDYFNQQWYD YTGVPQDSTV GEGWKGLFHL
EDQLQAAKNW RHSLATGEPY EIEYRLRHHS GQYRWNLGRA LPVRNEQGAI VRWMGTCTDI
HEQKLAQEGL LQADRLKDEF LAMLAHELRN PLAPIATAAH LLSTGTLDPE GLSRLSEVIS
RQAGHMTRLI DDLLDVSRVT WGQVTLDKNP LDMNSIVTEA VEQVRPLLQA KSQHLDIQLS
PQRNLVSGDR MRLVQVLANV LNNAVKYTPD GGRITLRVVE DDSHLTVCVR DNGIGMSREL
LAIAFELFTQ GERTSDRTQG GLGIGLALVQ TLVHLHGGTV RLHSEGAGLG SELTMVLPRL
PQDDGPRRFD AGDALAVPAR ESLRVMVVDD NVDAARLLGM FVELLGHEVF VQFHPASAIE
CAHQVQPDIC LLDIGLPDMD GYTLARQLHR IPGMENTVLA AVTGYSQPRD KQAAFAAGFN
FHFAKPISAQ QLESWLADVT RGRESLSASP