| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0081 |
|---|
| Symbol | |
|---|
| ID | 4686291 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 84719 |
|---|
| End bp | 85981 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639833075 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_980328 |
|---|
| Protein GI | 121602999 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.466459 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTCAC GCCACCGCCC CGCCCTGAGT TCCTGGACCC GCTGGATGCC GTTCGAGCTG
CTGGTGGCGC TGCGCTTTTT GCGCGAAGGC CGCATGCAGA GCGTCTTGAT CCTGGCCGGC
GTGACCGGCG GCGTGGCGGT CATCATTTTC TTGACCCAGC TCATCAACCA GTTGCAATCG
ACCATCATCG ACCGGGTGCT GGGCTCGCAG GCGCATGTGG TGATCCGGCC GCTCGAAGAA
GTCACGCAGC GCGTCGTCAC GCCCAGCGAA GACCGCGCCG TGGCCGCCGT GGTGCAGCCG
CGCGACCAGC GCCTGCGCTC GGTGGACCAG TGGGAGCGCA TCGCCGGCCT GGCCGCCGCC
ACGCCCGGCG TGCTGGCGGT GTCGCCCGTG GTCAGCGGCC CGGCCTTTGC GTCGCGCGGC
AACAGCAACA AGAGCGTCGC GCTGCTCGGC GTGCAGCCCG ACGCCTACCG GCGCGTGGTG
CGCATGGACG ACTACATGAC GCGCGGCCGC TTCGACGTGA CCGGCAGCAA CACCCTGATC
GGCGTTGACC TGGCCAGCGA CCTGGGCGTG ACCGTAGGCG ACAAGTTGCG CGTGACCAGC
GCCAGCGGCC GCACGGAAAC GCTGGACATC ACCGGCCTGT TCGACATGGG CAACCGCGAC
CTGAACCGGC GCTGGGTGTT CGTCACGCTC AAACTCGCGC AGACGTTGCT TGATTTGCCC
GGCGGCGTGT CCAACATCGA CCTGACGGTG AAGGATCTGT TTGGCGCCAA CCAGGTTGCC
GACGCCCTGC GCGCCCAGAC CGGCCTGACG GTGGACAGCT GGATGCAGAC CAACTCCGGC
CTGCTCAACG CCCTGAGCAA CCAGACGGTG TCGAACAACC TGATCCGCAG CTTTGTCGTG
ATCATCGTGG CGCTCGGCAT TTCCAGCGTG CTGGTGGTCA GCGTGGTGCA AAAGCAGCGC
GAAATCGGCA TTCTGCGGGC CATGGGCGCC GGGCGGCGGC GCATCATGAC GGTGTTTTTG
CTGCAGGGCG GGCTGGTCGG GCTGGCCGGC TCGGTGCTCG GATCGGCGCT GGCCTTCGGC
CTGCTGGTAG TGTTTTCGCA CGTCTTCAAA AGCCCTGATG GCGGCTCGCT GTTTTCGGCG
CAACTCGACC CGATGCTGGT GCTGCTGGCG TCGGTCGTGG CCTGCGGGGT CGGGCTGGCG
GCGGCGGCGA TACCGGCGCG CAGCGCGGCG AGGATGGACC CGGTGCAGGC GATTAGGGCT
TGA
|
|---|
| Protein sequence | MLSRHRPALS SWTRWMPFEL LVALRFLREG RMQSVLILAG VTGGVAVIIF LTQLINQLQS
TIIDRVLGSQ AHVVIRPLEE VTQRVVTPSE DRAVAAVVQP RDQRLRSVDQ WERIAGLAAA
TPGVLAVSPV VSGPAFASRG NSNKSVALLG VQPDAYRRVV RMDDYMTRGR FDVTGSNTLI
GVDLASDLGV TVGDKLRVTS ASGRTETLDI TGLFDMGNRD LNRRWVFVTL KLAQTLLDLP
GGVSNIDLTV KDLFGANQVA DALRAQTGLT VDSWMQTNSG LLNALSNQTV SNNLIRSFVV
IIVALGISSV LVVSVVQKQR EIGILRAMGA GRRRIMTVFL LQGGLVGLAG SVLGSALAFG
LLVVFSHVFK SPDGGSLFSA QLDPMLVLLA SVVACGVGLA AAAIPARSAA RMDPVQAIRA
|
|---|
| |