| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0047 |
|---|
| Symbol | |
|---|
| ID | 4689334 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | + |
|---|
| Start bp | 47101 |
|---|
| End bp | 48171 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639833041 |
|---|
| Product | periplasmic binding protein/LacI transcriptional regulator |
|---|
| Protein accession | YP_980294 |
|---|
| Protein GI | 121602965 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1609] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.108972 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGCAT CAGCCCCTTA CCACTCAGTA GTTTCCCTAG GATTCATGAC ACCAGCCCGC
CTTCGCCCCC GCGCCACCGG CCGCGTTACC CTGACCGACG TGGCGCAAGC CGCCGGCGTC
AGCCCGATCA CCGTGTCGCG CGCGCTGCGC GGCGAGCGCG CCGTCGATCC GGCGCTGGTC
GAGCGCGTGC AGGCGGCGGC GCGCTCGCTG GGTTATGTGC CCGACCCGGC GGCGCGCGCG
CTGGCGTCGC AGCGCAGCTC GCACGTCGCG GTGCTGATTC CGATGCTGTC GAACGCCTTG
TTCGTCGATC TGCTCGAAGC CGTGCAGCGC AGCCTGCGCC CGGCCGGCTA CCAGACGCTG
ATGGGCGTGA CGCACTACAA CGCCGACGAG GAGGAGCAAC TGCTGCGCGA GCAACTGCTG
CAGCGCCCGG CTGGCCTGGT CGTGACCGGG CTTGAACGCA GCGACGCCGC GCGCGCGCTG
ATTGCGCAAA GCGGCGTGCC CTGCGTGCAT GTGATGGAAA TGTCCAGCGT GCCCGGCGTG
TACAGCGTCG GCTTTTCGCA GGCCGATGCG GGGGCCGAAC TGACGCGGCA TTTGCTGGCG
CGCGGCCGCC GGCGCATCGC CTTCGTGGCC GCGCAGCTCG ATGCGCGAAC GCTGCAGCGG
CTCGAAGGCT GGCGCCGCGA ACTGCTGGCT GCCGGCTTGC ACGATCCGGC GCTCGAATGG
CTGGACCCGG CGCCGTCATC GATTGCGCTG GGCGCGCGCC TGTTCGAGCG GATCATCGGC
GAGCAGCCCG ACGTGGACGC GGTGTTCTTC TGCAATGACG ACCTGGCGCA GGGCGCCTTG
CTGGCGGCGC TGCGCCTGGG CGTTGCGGTG CCGGAGCGCG TGGCGGTGGC CGGCTTCAAC
GACCTGACCG GCAGCGACCA GATGCTGCCG CCCTTGACCA CGGTGCGCAC GCCGCGCAGC
GAAATCGGCC ACGCCGCCGC GCGCATGCTG CTGGCGCTGA TGAACGGCGA GACCGTGGCC
TCGCCCTGCG TCGATCTGGG TTACGAGCTG GTGGTGCGGG CCAGCACCTG A
|
|---|
| Protein sequence | MRASAPYHSV VSLGFMTPAR LRPRATGRVT LTDVAQAAGV SPITVSRALR GERAVDPALV
ERVQAAARSL GYVPDPAARA LASQRSSHVA VLIPMLSNAL FVDLLEAVQR SLRPAGYQTL
MGVTHYNADE EEQLLREQLL QRPAGLVVTG LERSDAARAL IAQSGVPCVH VMEMSSVPGV
YSVGFSQADA GAELTRHLLA RGRRRIAFVA AQLDARTLQR LEGWRRELLA AGLHDPALEW
LDPAPSSIAL GARLFERIIG EQPDVDAVFF CNDDLAQGAL LAALRLGVAV PERVAVAGFN
DLTGSDQMLP PLTTVRTPRS EIGHAAARML LALMNGETVA SPCVDLGYEL VVRAST
|
|---|
| |