| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0043 |
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| Symbol | |
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| ID | 4689983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | - |
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| Start bp | 43586 |
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| End bp | 44605 |
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| Gene Length | 1020 bp |
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| Protein Length | 339 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 639833037 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_980290 |
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| Protein GI | 121602961 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.482624 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.263408 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTTTC TTCGTAGAAC CGTGATTGCC GCCGCCGCTG CCGTGGCCTT GAGCGCCTCG
TTTTCCGCGC TGGCGCAGGA CATCAAGCCG CGCCTGATCC GCTTCGGCTA CGGCCTGAAC
GAGCAAAGCA ACCAGGGCCG CGCCGCCAAG GTATTCGCCG ACGAGGTCGC CAAGGCCTCG
GGCGGCAAGA TGAAGGTGCG CGCCATCGGC GCCGCCGCGC TCGGCCCCGA CACGCAGATG
CAGCAGGCCC TGATTGGCGG CGCGCAGGAA ATGATGGTCG GCTCGACCGC CACGCTGGTC
GGCATCACCA AGGAAATGGC GCTGTGGGAC ACGCCCTTCC TGATCAACAA CACCAAGGAA
GCCGACGCCC TGCTTGACGG CCCGATTGGC GAGAAGATCA AGGACAAGCT GCAGGACAAA
GGGCTGGTCG GCCTGGTCTA TTGGGAAAAC GGCTTTCGCA ACCTGACCAA CAGCAAGCGC
CCGGTCACCA AGGTCGAGGA TCTGGACGGC ATCAAGCTGC GCGTGATGCA GAACAACGTG
TTTTTGAGCA GCTTCAAGAC GCTGGGCGCC AACGCCATTC CGATGGCGTT TTCCGAACTC
TTCGGCGCGC TGGAAACCAA GACCGTCGAT GGCCAGGAAA ACCCGTACAA CACGATTTTG
TCGAGCAAGT TCTACGAGGT GCAGAAGTAC CTGACGGTGA CCAACCACGT TTACAGCCCG
TGGATCGTGC TGGTCAGCAA GAAGTGGTGG GACCAGCTGT CCAAGGCCGA GCAGAAGGTG
CTGATGGACG CGGCCAAGAC CAGCCGCGAC TACGAGCGCA AGGACACGCG CGAGGAAGCC
TCCAAAGCCA TGGCCGACCT CAAGGCCAAG GGCATGCTGG TCAATGAGCT GGCGCCCGCA
GAAGCCGACC GCATGCGCAA CAAGCTGACC CGCGTGTATG CCGAAATCGG CACCGAAGTC
GGCATGGACC TGTGGATTGC CACGCAGAAC GAACTGCTGA AGATTCGCGG CAAGAAATGA
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| Protein sequence | MTFLRRTVIA AAAAVALSAS FSALAQDIKP RLIRFGYGLN EQSNQGRAAK VFADEVAKAS
GGKMKVRAIG AAALGPDTQM QQALIGGAQE MMVGSTATLV GITKEMALWD TPFLINNTKE
ADALLDGPIG EKIKDKLQDK GLVGLVYWEN GFRNLTNSKR PVTKVEDLDG IKLRVMQNNV
FLSSFKTLGA NAIPMAFSEL FGALETKTVD GQENPYNTIL SSKFYEVQKY LTVTNHVYSP
WIVLVSKKWW DQLSKAEQKV LMDAAKTSRD YERKDTREEA SKAMADLKAK GMLVNELAPA
EADRMRNKLT RVYAEIGTEV GMDLWIATQN ELLKIRGKK
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