| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0025 |
|---|
| Symbol | |
|---|
| ID | 4687100 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polaromonas naphthalenivorans CJ2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008781 |
|---|
| Strand | - |
|---|
| Start bp | 22361 |
|---|
| End bp | 23635 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639833019 |
|---|
| Product | glycosyl transferase family protein |
|---|
| Protein accession | YP_980272 |
|---|
| Protein GI | 121602943 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0744] Membrane carboxypeptidase (penicillin-binding protein) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.676454 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.397236 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCGCCC GGCGCACCTT CGCCCGGGTC ATGGCGGTTT TGCTGGCGCT GTCGGCGGCC
CTGGTGGTGG CGCTGTACCT GGTTGTCAAA ACCCTGCTCG CGCCGCTGCC CGGCGAATGG
GCCACGTCGA TTCGCCTCGG CCCGGTGCGG CTTCAGGCCA GCGTGCCCGC GCTGCTGCGC
CTGGCCACCG CGCCCTGGCT GGCGCCCCTG CTCGATGGCC GGACGGTGGC GGCGTACAAC
GGGCCGGTGC ATCTGGCCTG GCAGGCGGAC AGCCAGACGC TGGCGGCGCG CTGCGCGCCC
TGCGCCGTGC AGGCGCCGGC GCTGGGCGGC GAGCCGGTCG AGGTCGATGA ACTGCGGCTC
ACCATCCAGC GCCACGGCGA ACAGCTGAAC GGCGAAATCT CGTCAGGCCA AGTGAAGGCC
GTCTGGCACG GCGACTTGAC CAAGGGCGGC TTGCGCCTGC GCCTGCAGTT GCCCATGACG
CCCATGGCCG ATGCCTATGC GCTGTTCGGC GCGTCGATTC CCGAACTGGC GCAAGCCCGC
ATCGAAGGCC GGCTGGCATT GACCGCCACG CTGGCCCTGC CGGGCGGCGA GTTCAGCATG
ACGCCGCAGA TCGAGGCCTT CCAGGTCAGC GGACTGGGCA CCGAAGCGCT GGTCAATGCG
CGCTCGGCCT GCAGCGACAC CGCCTCGCGC CTGACGCCTG AAAGCTGGCT GGCGCGCGCC
GTGATCGCCG CCGAGGACCA GCGCTTTTAC GAGCACGGCG GCTACGACCT GGCCGAACTC
AGCGCCGCGC TGGTGCAGAA CCAGGACAGC CGGCCGGAAG GCCGGGCCGG GCGCGGCGCC
AGCACGCTGA CCCAGCAGCT GGCCAAGCTG CTGGTCACCG GCGACGAGCG CAGCCCGGCG
CGCAAGCTGC GCGAGTTGCT GTATGCGGTG GAAATGGAGC AGACCCTGGG CAAGAACCGC
ATCCTGCGGC TGTACCTGGC GCATGCGCCG TGGGGAAATG GGATTTGCGG CGCCGAGGCG
GCGTCAAAAC GCTACTTCGG CCGCCCGGCG ACTGCGCTGA ACCCGTCGCA GGCCGCCTGG
CTGGCCGCCA TGCTGCACAA CCCGGCGCTG GAAGCCGAAC ACTGGGCGAG TACCGGCCAG
ATCAACGTGG CGCGCACGCA GTGGGTGCTG ATGGGAATGC GCGCCCTGCC GCGCCAGCAG
CGCCAGCGGC TGGCGCGGCA GCTTGGAGAG CCGGGGCACG AGGTATGGAA AGCGCAGGTG
ACGAAGCAAC GATAG
|
|---|
| Protein sequence | MTARRTFARV MAVLLALSAA LVVALYLVVK TLLAPLPGEW ATSIRLGPVR LQASVPALLR
LATAPWLAPL LDGRTVAAYN GPVHLAWQAD SQTLAARCAP CAVQAPALGG EPVEVDELRL
TIQRHGEQLN GEISSGQVKA VWHGDLTKGG LRLRLQLPMT PMADAYALFG ASIPELAQAR
IEGRLALTAT LALPGGEFSM TPQIEAFQVS GLGTEALVNA RSACSDTASR LTPESWLARA
VIAAEDQRFY EHGGYDLAEL SAALVQNQDS RPEGRAGRGA STLTQQLAKL LVTGDERSPA
RKLRELLYAV EMEQTLGKNR ILRLYLAHAP WGNGICGAEA ASKRYFGRPA TALNPSQAAW
LAAMLHNPAL EAEHWASTGQ INVARTQWVL MGMRALPRQQ RQRLARQLGE PGHEVWKAQV
TKQR
|
|---|
| |