| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnap_0019 |
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| Symbol | |
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| ID | 4687094 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas naphthalenivorans CJ2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008781 |
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| Strand | + |
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| Start bp | 16663 |
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| End bp | 18579 |
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| Gene Length | 1917 bp |
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| Protein Length | 638 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 639833013 |
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| Product | thiamine biosynthesis protein ThiC |
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| Protein accession | YP_980266 |
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| Protein GI | 121602937 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0422] Thiamine biosynthesis protein ThiC |
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| TIGRFAM ID | [TIGR00190] thiamine biosynthesis protein ThiC |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.691133 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.432221 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAAA CCAATCTTTC CGTCGATGCA GCGGACCTGA CCAGCCGCAT CACCCGCACG
CCTTTTCCGG GTTCGCGCAA GATCTACATC GAAGGCTCGC GCCCCGACAT CCGCGTGCCG
TTTCGCGAAG TCACGCTCAC CGACACGCTG GTGGCCGAAG GCAGTGAAAC CCGCCGCGAG
GCCAATCCGC CGCTGCGCCT GTTCGACTCG TCGGGCGTGT ACACCGACCC GGCAGCAAGC
ATCGACATCA CGCGCGGCCT GTCTCCGCTG CGCGGCGCCT GGATCAACGA GCGCCAGGAC
ACCGAAGCCC TGCCCGGCAT CAGCAGCGCC TACGGCCGCG AGCGCCTGAA CGACCCGGCC
CTCAGCGCGC TGCGCATGGC CCACGCGCCC GTGCCGCGCC GCGCCAAGGC GGGCGCCAAC
GTGTCGCAGA TGCATTACGC GCGCCAGGGC ATCATCACGC CGGAGATGGA ATACATCGCG
ATCCGCGAAA ACCTGGTGCG CGCCCAGCTT GCCGAACGCC TGGCGACCGA GCGCGTGCCG
AAAACCGGCC ATTCGTTCGG CGCGTCGATT CCGAAAGACA TCACCGCCGA ATTCGTTCGC
GACGAAGTGG CGCGCGGCCG CGCCGTGATT CCGAACAACA TCAACCACCC CGAAACCGAG
CCGATGATCA TCGGCCGCAA CTTCCTGATC AAGGTCAACG CCAACATCGG CAACTCGGCC
GTCACCTCGT CGATTGAAGA GGAGGTGGAC AAGCTGGCCT GGTCGATCCG CTGGGGGGCC
GACACCGTGA TGGACCTCTC GACCGGCGAG AACATCCACG AAACCCGCGA ATGGATTCTG
CGCAATTCGC CGGTGCCGAT TGGCACGGTG CCGATTTACC AGGCGCTGGA AAAAGTCAAC
GGCAAGGCCG AAGACCTGAC CTGGGAAATC TTCCGCGACA CGTTGATCGA GCAGGCCGAG
CAGGGCGTGG ACTATTTCAC CATCCACGCC GGCGTGCGCC TGGCCTATGT GCCGCTGACC
GCGAACCGCC TGACCGGCAT CGTCTCGCGC GGCGGCTCGA TCATGGCGAA ATGGTGTTTG
TCGCACCACA AGGAAAGCTT TTTGTACGAG CATTTCGAGG AGATTTGCGA AATCATGAAG
GCCTACGACG TCTGCTTCTC GCTCGGCGAC GGCCTGCGCC CCGGCTCGAT TGCCGACGCC
AATGACGAAG CGCAGTTCGC CGAACTGCAC ACGCTGGGCG AACTCACGCA GATCGCCTGG
AAGCACGACG TTCAGGTGAT GATCGAAGGC CCCGGCCATG TGCCGCTGCA GCTGGTCAAG
GAAAACGTCG AGAAGCAACT CGAAGCCTGC TTTGAAGCGC CGTTCTACAC GCTTGGCCCC
TTGATCACCG ACATCTCGCC CGGCTACGAC CATATTTCGT CGGCGATGGG CGCGGCGAAT
ATCGGCTGGT ACGGCACGGC CATGCTGTGC TACGTGACGC CCAAGGAGCA TCTGGGCCTG
CCGAACCGCG ACGACGTGAA GCAGGGCCTG ATCGCCTACA AGATCGCCGC GCATGCGGGC
GACCTGGCCA AGGGCTACCC GGGCGCGCAG ATGTGGGACA ACGCGGTCAG CAAGGCGCGC
TTCGAGTTCC GCTGGGAAGA CCAGTTCCGC CTGGCGATTG ACCCCGACAC GGCGATGGCC
TACCACGATG AAACGCTGCC CAAGGAAAAC GCCAAGGTGG CGCATTTCTG CTCGATGTGC
GGGCCGAAGT TCTGCTCGAT GAAGATTTCG CAGGAAGTGC GCGAGTTTGC GCGGCTGAAT
CCGTCCACCA CGACGCTGGC CAAGGCGCCG GGCGTGATTC CGATCCAGCA GGTCAGCAGC
GGCTTCGAGG AAAAAGCCGA GGAGTTCCGC AAGGGCGGGA ACGAGATTTA CTCCTGA
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| Protein sequence | MAKTNLSVDA ADLTSRITRT PFPGSRKIYI EGSRPDIRVP FREVTLTDTL VAEGSETRRE
ANPPLRLFDS SGVYTDPAAS IDITRGLSPL RGAWINERQD TEALPGISSA YGRERLNDPA
LSALRMAHAP VPRRAKAGAN VSQMHYARQG IITPEMEYIA IRENLVRAQL AERLATERVP
KTGHSFGASI PKDITAEFVR DEVARGRAVI PNNINHPETE PMIIGRNFLI KVNANIGNSA
VTSSIEEEVD KLAWSIRWGA DTVMDLSTGE NIHETREWIL RNSPVPIGTV PIYQALEKVN
GKAEDLTWEI FRDTLIEQAE QGVDYFTIHA GVRLAYVPLT ANRLTGIVSR GGSIMAKWCL
SHHKESFLYE HFEEICEIMK AYDVCFSLGD GLRPGSIADA NDEAQFAELH TLGELTQIAW
KHDVQVMIEG PGHVPLQLVK ENVEKQLEAC FEAPFYTLGP LITDISPGYD HISSAMGAAN
IGWYGTAMLC YVTPKEHLGL PNRDDVKQGL IAYKIAAHAG DLAKGYPGAQ MWDNAVSKAR
FEFRWEDQFR LAIDPDTAMA YHDETLPKEN AKVAHFCSMC GPKFCSMKIS QEVREFARLN
PSTTTLAKAP GVIPIQQVSS GFEEKAEEFR KGGNEIYS
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