Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_4187 |
Symbol | |
ID | 4670348 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008765 |
Strand | - |
Start bp | 21549 |
End bp | 22049 |
Gene Length | 501 bp |
Protein Length | 166 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 639826861 |
Product | lytic transglycosylase, catalytic |
Protein accession | YP_974023 |
Protein GI | 121582491 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.000629 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0000117899 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTACTTCT CTGCACGCGC ACTGATCGCG GCGGCATCGC TGATGCTGCC GCTCGCTGCT TCTGCAACGT GCTGGGATGA GGCTGGGCGC GGCTACGGGA TCGACCCCTT GCTGTTGAAG GCGATTGCCT GGAAGGAATC GCGCGGCTGG ACGGGTGCAG TCGGCCCGAA GCTGAAAGAC GGCAACCGCG CGCTGGGCCT CATGCAGATC AACACGATCC ACCTGCCGAA CCTCGCGCGC TTCGGCATCC GCCGTGAACA CCTGTTCGAC GCTTGCACCT CGCAGAAGGT GGGGGCCTGG GTTCTGGCCG ACTGCATCCA GCGTTTCGGC GCTACCTGGA AGTCCGTGGG CTGCTACTAC GCCGGTCCGG CATCGACCAA TGTGAGCGCC CAGGTTGAGT ACGTCCGCGA CGTGCAGCGG TTCTACGAGG GCTACCGCAG ACAGCAAGCC CACCAAATTT CAACTTCACC GGCCCAAGTG GCCAGTTTCC AAGGGGATTG A
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Protein sequence | MYFSARALIA AASLMLPLAA SATCWDEAGR GYGIDPLLLK AIAWKESRGW TGAVGPKLKD GNRALGLMQI NTIHLPNLAR FGIRREHLFD ACTSQKVGAW VLADCIQRFG ATWKSVGCYY AGPASTNVSA QVEYVRDVQR FYEGYRRQQA HQISTSPAQV ASFQGD
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