Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ajs_4183 |
Symbol | |
ID | 4670405 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax sp. JS42 |
Kingdom | Bacteria |
Replicon accession | NC_008765 |
Strand | - |
Start bp | 19820 |
End bp | 20413 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639826857 |
Product | hypothetical protein |
Protein accession | YP_974019 |
Protein GI | 121582487 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02761] type IV conjugative transfer system protein TraE |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0000132578 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000422379 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCACCAG ATAAAGCAAT CAATGAGCGG GACAAGTTGC AATCGCAAGT CCGCTTCCAC CGCGCGATGA ACGCGGGCCT GCTGGGCACT CTGTTTTTCG GGGTGCTGCT GCTGGGCTTC GTCGTCGTGC GCGACACAAC CAAGATCGTG CCGCCTGAAG TTAAGCGGCC CTACGAGATT GGATCGAACT ACGCCAATAA GGACTACCTG CTGGATATGG CCGGTTATGT CCTGGGCACG GTGTTGACCG TCACGCCGGA GACGGTTGAT TACAACAACA AGGTGATTCT CAAGATGGCC GACCCGGACG GCTACGCCGG GTTGAAGACC GCGCTTGATG CGGCCGCAAT GCGGCTCAAA CAGGAGCGAG TCACCACTAT TTGGGTTCCT CGCAAAGAGG AAGTCAGCGA GCAGGACAAG CGCGTGAAGG TCAGCGGAAA ACTCAAGACC TTTATTGCCG ACAAGCTCAC TTCCGAACGC GAGAAGGACT ATCTCGTTGA ATTCACCATC ACTACCTCGG GGCGTCTCTA TGTTTCCAAG ATCGAAGAAA TCGTTAAGCG CGATCCTTCT GCTAACAAGC CTGCTGGCAA CTGA
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Protein sequence | MAPDKAINER DKLQSQVRFH RAMNAGLLGT LFFGVLLLGF VVVRDTTKIV PPEVKRPYEI GSNYANKDYL LDMAGYVLGT VLTVTPETVD YNNKVILKMA DPDGYAGLKT ALDAAAMRLK QERVTTIWVP RKEEVSEQDK RVKVSGKLKT FIADKLTSER EKDYLVEFTI TTSGRLYVSK IEEIVKRDPS ANKPAGN
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