Gene Pnap_4558 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_4558 
Symbol 
ID4685546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008758 
Strand
Start bp123608 
End bp124288 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content60% 
IMG OID639826407 
Producttwo component heavy metal response transcriptional regulator 
Protein accessionYP_973572 
Protein GI121583131 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID[TIGR01387] heavy metal response regulator 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAGATTT TGGTAATTGA AGACGAGCCC AGAGCGGCCG ATTATTTGCG CCAGGGCTTG 
ATGGAAAGCG GCTACGCCGT GGAGGTTGCC CACAACGGAA CGGACGGTTT GCACGCGGCG
GTCAATGGCG ATCATGGATT GGTGATTCTG GACATCATGC TGCCCGGCAT TGACGGATTT
GCCGTGCTGT CGGCGCTGCG TACCTCCCGG CAAATACCCG TTTTGATGCT CACCGCCCGG
GGCAATACCG ACGACAAGGT GCGCGGGTTT GATCTGGGCG CGGATGATTA CCTGCTCAAG
CCTTTTCAGT TTCCTGAACT GTTGGCCAGG GTGCGCGCCC TGCTCAAACG CGGCCAGCCG
GTCGTAAAGG ACCCCGTTTT ACGGGCTGCC GATCTTGAAA TTGATCCGGT GCGTCACCGG
GCCACGCGCG CCGGCCAGCG GATCGACCTG TCTGCCAAAG AGTTTGCCTT GCTGACCCTG
CTCGCCCAGA GGGCGGGCGA AGTGCTTTCC AGAACCCAGA TCGCGTCGCT GGTGTGGGAC
ATCCATTTCG ATTCGGACAC CAATGTGGTC GAAGTGGCGA TCCGGCGGCT GCGCGCCAAG
ATCGACGATC CTTTTGACGA CAAACTGATC CACACGGTGC GCGGCGTGGG TTACGTACTG
GAACGCCGGG CGTCGGTGTG A
 
Protein sequence
MKILVIEDEP RAADYLRQGL MESGYAVEVA HNGTDGLHAA VNGDHGLVIL DIMLPGIDGF 
AVLSALRTSR QIPVLMLTAR GNTDDKVRGF DLGADDYLLK PFQFPELLAR VRALLKRGQP
VVKDPVLRAA DLEIDPVRHR ATRAGQRIDL SAKEFALLTL LAQRAGEVLS RTQIASLVWD
IHFDSDTNVV EVAIRRLRAK IDDPFDDKLI HTVRGVGYVL ERRASV