Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnap_4301 |
Symbol | |
ID | 4685229 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polaromonas naphthalenivorans CJ2 |
Kingdom | Bacteria |
Replicon accession | NC_008757 |
Strand | + |
Start bp | 206036 |
End bp | 210985 |
Gene Length | 4950 bp |
Protein Length | 1649 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639826160 |
Product | helicase, C-terminal |
Protein accession | YP_973325 |
Protein GI | 121582883 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG4646] DNA methylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.182147 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAAAAAC CTAAAGTAAT TTCCGTCAAC CAAATGTCCT TATTTGGCGA CGTTATTGAA ATTGAGGAGC CGCCAGCGTC TGTAGCGGTC CTCAAACCGG TTGCAAAAGC CGTAGAAACG CTGACTAAGC GCCGGGAGAT GTTTGTTCTG GAAAGCAAAT ACTTCGCTCA GCTGACCGGG CCTGCAGCCA AGGTGAAAGC CAACCTGGCA GCCGTCAAAA TGGCCATGCA AGGTGGCAAA AAATCGCTTG AAGAAAAAGC GGTCATCGTA GCCTACAGCG GCTGGGGTGG CATTTCTGCC ATGTTTGCCG ATAACGGCGA TTTCGAGGCC CAGCGGCTTG AGTTTCTGGA AATGGTCGGT GAAAAATCGT ATGCACAGGC CCGCGACAGC GTGCTGACGG CTTACTACAC CGAGCCAGAA GTAATCCAGG CCATGTGGGG ACTTGTCCAA AAGATGGGTT TCAAGGGCGG AAAAGTCTTG GAGCCCTCGG CGGGAACAGG AAACTTCATT GGTGCCATGC CTGTTGCCCT GCGGGAAGCT TCGACCATCA CCATGGTCGA GCCTGACAGC GTTAGCGCAA CGATCTGCAA GGCGCTCTAT GCGGACTCTG ATACGTTGGT TCACACCTGC GGAATGGAGA TCGCACCGCT GCGCAGCGAA AGCTTTGATG TGGTCATCGG CAATGTGCCT TTTGGGAACT ACCGGGTTCA TGACTCGAAG TTTGATTGCA TGAAGCTGGT AATCCACGAC TACGCGATTG CAAAGTCACT GGACCTCGTG CGTGCCGGCG GCATTGTGGC CGTGATCACC TCAACGGGAA CGATGGACAA GCCGAAAAGC AATTTTCGCG AGTACATCGC TGAACGCGCT GATCTGGTGA CCGCTATTCG TTTGCCATCG GGTGCATTCA CGCGCCTGGG TGAGACGGAT GTGGCGACTG ACATTCTTGT GCTTCGTAAA AAACCAAAAG TTGCTGACTC TCATGTGGGT CACGACTTCA AGGTGGCTGA AGTGATCAAG TTGCACGAGT TCGGCAACAT GAATGAGCGC AGTTATGACA CGATCAATGC GTTCTATTCA CAGAACCAGC GCCAGCTCCT CGGAATGCCC AAGGCCAGCA CAAACCAGTT TGGTGCTTGC CTCAAGTTCG TGCCGGAGTT GGCCTGGGGT GAACAACTGA AAACCATGTG CAGCGATGCG ACGTTGGACG GTTGGTACAC GCACGAGGAA CGCAAAGAAA TTCGTGAGAA TTTCGTGGCC GACATGAGCG GCTTGAAAAC CATGGTGGCC AGCGGCTTTT TCTTTGACGA TCAGGGTCAG CTGTATTACA TGACCAACCA AAACGCTGAA AGCCAGGCCC ATTTGCCTGA GCCGAAGCGT CGGCGGATTG AAGGAATGAC GCATATTCGA AATTGCGTCG TGGAACTGCT GGAGTTGGAT TCGGTGGGTG CGAACAGCAC CTATGAACGC GCCAAACTCA ACCGCTTGTA TGACGCATTC GTTGTGAAGT ACGACTACCT GATGAAGCCG TATAACCGGC GCCTGTTCAG CCTGGACAGC CATGCGCCGC TTTTGTGGTC GCTTGAGCGC TACGATGACG AAAATGAAAA GGCCGTGAAA ACGGATATTT TCAGCAAGTC AACCGTAAGC GCTGCGGTGC TGTCTGATAC GGCTGAATCG CTGTCCGATG CGATTGCCCT GTCTTACAAC CGCTTCGCGC GGCTGGACCT GGCATTCATG GCCAAGGCCT TGTCGCTCGG TGAGGACGAG GTGGTGCAAA AGCTGCTTGA CGCTAACCGG GTCTTTTTTG ATCCAGAAAG CAGAGAGTAT GTGGACTCCG AGGTCTATCT GAGCGGCAAG GTGCTCGAAA AGCTACTTGT CGCCCGTGCG GCTGCAGAAG GCGACGAACG TTACATGCTC AATGTTGCTG CCCTTGAAGC GGTGGTGCCG GCAACGGTGC CGCTGAGCAA GGTCAGCATC CAGTTGGGTG TGCCATGGAT CGGGCAAGAG GATGTGCAGG CCTTTGTCGA TGAAATCGTG ACCCTGGATG CCGAAAAGGT CCAAGACTAC AACGACATTA AAGCTGTGAC AGTTACGCAA GTGATTGGCA TGGCAGTATG GTCGGTGACG ATGGGGAATC GATTTCAAAA GGAAACCAGG TATAGCGGTG ATTGGGGAAC AGCGCATAGG CCATTTGATG ACCTGCTGAG CGACTTGCTC AATCAGCGCA GCACCACGGT TTACATGGAA ATTGAAGTCG AGCCGGGCAA GACAAAGCGC ATCGTTAACA AGGACGAGAC GCTGGCGGCA CGCGACAAAG CCGAGAAGAT CCAGGCAGCA TTTACCTCAT GGGTCTATGC AGACCCGGAG CGTGTCCAAC GGCTGGAGTT CACCTACAAC AGCAAATTCA ACGGGACACT CAACCGTGAA TTCGATGGCG CGCACTTGGT GGTGCCGGGG CTGAGTTCGG CTGTCAAGCT GCGCTCGGAC CAACTGGACG GCATTTGGGC CGGTTTGATC GGCGGCAACA AGCTTTACGC TTATGCCGTG GGTGGCGGCA AGACGCTGAT TACCATTTGC CTTGCGCAGA TGATGAAGCG TCTGGGTTTT GCCAAGAAGC CGACCATCGT GGTGCCCAAC CACATGCTTG AAGAGTTTGC GGGACAGTAT GCGAGGGCTT TCCCTCGTGC ACGAATCCTG GCGGCCAGTA AAGAAGACCT GGAGGGCGAC AAGCGCCGGG TACTGATGAT GAGATTGGCA ATGGAGGATT GGGATTGCAT CATCATCACG CACGGTTCGT TCGGAAAAAT TGCACTCTCT AAACAAGTTG TACAGGATTT CGCAGACGAG GCCGGTGAAA AAATCGATGC CATGATCTCA GGCTCGGATG ATCGGAACGT GGTGCGCGAG GCCGTTCGGC AAAAGAAGAC TGTCATTGCG AAAGTGATGG CGCTGGCTGA AAAGGGCAAG AAAGACGATG GGGTTTTGAC TTTTGACCAA CTGGGCATTG ATCAGTTGCT GGTCGATGAA GCCGACCTTT TCAAGAATTT GTGGTTTCAA ACAAAGAAAA CACGGGTTCC CGGACTGAGC AGCGCTTGTA GTGGTCGCGC TTTGGATTTA TTTCTGAAGT CGCGCATCAT TTTCGAGCGC CGCAAGGACG GATTTGGTCT AGTTTTTGCC ACAGCAACGC CGATCGCCAA CACGATTGGC GAAATGTTCA TCATGCAGAC CTACTTGCAG CCTGACCGCC TCAAAGAGTT GGGAATCGAT GGGTTCGATG CATGGGCGGC TAACTTTGCC CGTGAAGTGA CTTCCATCGA GGTGACGCCC GATGGAGGTG GCTACCGGAT GCACACACGT TTTTCCCAAT TCGTGAACGT GCCAGAGTTG ATGCTGATTT TCAAAGAAGT CGCATTGATT CGAACCAAGG CTATGCTGGC GCTTCCAGAG CCAAAAGTCG CTGGTGGGCG TCATTGCATT GTTGCCGCGC GTGCATCTGA AGCTCAAAAG GCCTATGTGC AAAAACTCGT GGACAGGGCT GCGGCTATCC GTGAAGGAAA AGTCAAGCCG CATGAAGACA ACATGCTGTG CGTGACAGGT GACGGCCGCA GGGCCGCCCT GGATATGCGC TGTGTGGATG GCTTGGAAAT GGACCACGCA GGCAGTAAGT TGAATGCCTG TATTGAAAAT GTCTATCGAC ATTGGGCTGA AGGCCGCGAG AAAAAGCTTA CCCAGCTTGT ATTTTGCGAC TTGAGCACTC CGAAGGCACA TGGCTTTTCG GTCTATACCG ACATGCGTGA AAAGTTAGTT TTAATGGGCG TGCCGGTTGA AGAAATCGCG TTCGCTCAGG ACTACAAGAC GACAGCGCAA AAGGGTGAGC TTCACCGCAA GGTTCGCTCA GGCCGTATCC GTATCCTGCA GGGCTCTACA GAGCTGATGG GGTTCGGTAC CAATGTGCAG GATCGACTGG TGGCAGAGCA CCATCTGGAC GCGCCATGGC GTCCGCGTGA CGTTGAGCAG CGGGACGGCC GCATCATCAG ACAGGGCAAC CTGAATGAAG AGGTGTTCAT CTACCGCTAC GTCACGGAAT CGACGTTTGA TGCCTACATG TGGCAAACGC TCGAACGCAA GGCCGGCTTC ATCGCCCAAG TGATGGAGGG AAAAACAGAA ATGCGTAGTG TTGAAGATGT GACCAGCCAG GCGTTGAGCT TTGCTGAAGT CAAGGCAATT GCCTCGGGTA ACCCCTTGGT GATCGAGAAG GCGGGTGTCG ATGCGGAAGT GTCGAAAATC CTCTCACTCA AAGCTGCTTG GCGCTCGGAC CGCGAAATCG TGCTCTCACG ACTCGCGAAC TGTGTGCAAA GCATCGACTA CAGCAAAAAG CGGATTCAGG CGTTTGAAGG CGACCTTGGA TCGATTGGGA ACGCAAGCGA AGTTACGCTG GGTGGAATGG TGCATAGTGC GTCAGATAAG ACTGGGAAGT CTGTGATGGC GCACCTGGCA TCGATAAAGG CTAGCGTAAC GACCAAGGAG CATCAGTGGA GGTCGTTTGA CGCCCTGCTG GCCGTTGGCA ACATGAGCAT CGGGTTGGAA CTGCATGGAA AAATTGGCAG CGCAAGTTAC AAGTTCTTTG CAAAGGGATC CTCTGGCGTG AGCTTTGAGT TCACGCTTCC CTACGGTGCG AAAGACATCG AAATCTTTTT GAGGTCTAAA CACCTTGAAA CGGATTTGAT GGACAAGCTA AGTTGGTTCA GAACCCGGCT CATTGCGGAC GAGGCTGAGT TGATCAACCT GAAACGTGGC GCTGAAAAAC CATTCGAGTA CGCTGAAAGG CTCGAAGCAG CGCTGAACAA GCAAGAAGAG ATCGACAAGT CGTTGGACCT GAGGGCTGAC GATGTTTCGA CGCTGTTCAT GGAAGAAGAA AAGCAAGAAG AGGCCGAAAT GGCTTCATAA
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Protein sequence | MKKPKVISVN QMSLFGDVIE IEEPPASVAV LKPVAKAVET LTKRREMFVL ESKYFAQLTG PAAKVKANLA AVKMAMQGGK KSLEEKAVIV AYSGWGGISA MFADNGDFEA QRLEFLEMVG EKSYAQARDS VLTAYYTEPE VIQAMWGLVQ KMGFKGGKVL EPSAGTGNFI GAMPVALREA STITMVEPDS VSATICKALY ADSDTLVHTC GMEIAPLRSE SFDVVIGNVP FGNYRVHDSK FDCMKLVIHD YAIAKSLDLV RAGGIVAVIT STGTMDKPKS NFREYIAERA DLVTAIRLPS GAFTRLGETD VATDILVLRK KPKVADSHVG HDFKVAEVIK LHEFGNMNER SYDTINAFYS QNQRQLLGMP KASTNQFGAC LKFVPELAWG EQLKTMCSDA TLDGWYTHEE RKEIRENFVA DMSGLKTMVA SGFFFDDQGQ LYYMTNQNAE SQAHLPEPKR RRIEGMTHIR NCVVELLELD SVGANSTYER AKLNRLYDAF VVKYDYLMKP YNRRLFSLDS HAPLLWSLER YDDENEKAVK TDIFSKSTVS AAVLSDTAES LSDAIALSYN RFARLDLAFM AKALSLGEDE VVQKLLDANR VFFDPESREY VDSEVYLSGK VLEKLLVARA AAEGDERYML NVAALEAVVP ATVPLSKVSI QLGVPWIGQE DVQAFVDEIV TLDAEKVQDY NDIKAVTVTQ VIGMAVWSVT MGNRFQKETR YSGDWGTAHR PFDDLLSDLL NQRSTTVYME IEVEPGKTKR IVNKDETLAA RDKAEKIQAA FTSWVYADPE RVQRLEFTYN SKFNGTLNRE FDGAHLVVPG LSSAVKLRSD QLDGIWAGLI GGNKLYAYAV GGGKTLITIC LAQMMKRLGF AKKPTIVVPN HMLEEFAGQY ARAFPRARIL AASKEDLEGD KRRVLMMRLA MEDWDCIIIT HGSFGKIALS KQVVQDFADE AGEKIDAMIS GSDDRNVVRE AVRQKKTVIA KVMALAEKGK KDDGVLTFDQ LGIDQLLVDE ADLFKNLWFQ TKKTRVPGLS SACSGRALDL FLKSRIIFER RKDGFGLVFA TATPIANTIG EMFIMQTYLQ PDRLKELGID GFDAWAANFA REVTSIEVTP DGGGYRMHTR FSQFVNVPEL MLIFKEVALI RTKAMLALPE PKVAGGRHCI VAARASEAQK AYVQKLVDRA AAIREGKVKP HEDNMLCVTG DGRRAALDMR CVDGLEMDHA GSKLNACIEN VYRHWAEGRE KKLTQLVFCD LSTPKAHGFS VYTDMREKLV LMGVPVEEIA FAQDYKTTAQ KGELHRKVRS GRIRILQGST ELMGFGTNVQ DRLVAEHHLD APWRPRDVEQ RDGRIIRQGN LNEEVFIYRY VTESTFDAYM WQTLERKAGF IAQVMEGKTE MRSVEDVTSQ ALSFAEVKAI ASGNPLVIEK AGVDAEVSKI LSLKAAWRSD REIVLSRLAN CVQSIDYSKK RIQAFEGDLG SIGNASEVTL GGMVHSASDK TGKSVMAHLA SIKASVTTKE HQWRSFDALL AVGNMSIGLE LHGKIGSASY KFFAKGSSGV SFEFTLPYGA KDIEIFLRSK HLETDLMDKL SWFRTRLIAD EAELINLKRG AEKPFEYAER LEAALNKQEE IDKSLDLRAD DVSTLFMEEE KQEEAEMAS
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