Gene Pnap_4301 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnap_4301 
Symbol 
ID4685229 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas naphthalenivorans CJ2 
KingdomBacteria 
Replicon accessionNC_008757 
Strand
Start bp206036 
End bp210985 
Gene Length4950 bp 
Protein Length1649 aa 
Translation table11 
GC content53% 
IMG OID639826160 
Producthelicase, C-terminal 
Protein accessionYP_973325 
Protein GI121582883 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG4646] DNA methylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.182147 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAAAAAC CTAAAGTAAT TTCCGTCAAC CAAATGTCCT TATTTGGCGA CGTTATTGAA 
ATTGAGGAGC CGCCAGCGTC TGTAGCGGTC CTCAAACCGG TTGCAAAAGC CGTAGAAACG
CTGACTAAGC GCCGGGAGAT GTTTGTTCTG GAAAGCAAAT ACTTCGCTCA GCTGACCGGG
CCTGCAGCCA AGGTGAAAGC CAACCTGGCA GCCGTCAAAA TGGCCATGCA AGGTGGCAAA
AAATCGCTTG AAGAAAAAGC GGTCATCGTA GCCTACAGCG GCTGGGGTGG CATTTCTGCC
ATGTTTGCCG ATAACGGCGA TTTCGAGGCC CAGCGGCTTG AGTTTCTGGA AATGGTCGGT
GAAAAATCGT ATGCACAGGC CCGCGACAGC GTGCTGACGG CTTACTACAC CGAGCCAGAA
GTAATCCAGG CCATGTGGGG ACTTGTCCAA AAGATGGGTT TCAAGGGCGG AAAAGTCTTG
GAGCCCTCGG CGGGAACAGG AAACTTCATT GGTGCCATGC CTGTTGCCCT GCGGGAAGCT
TCGACCATCA CCATGGTCGA GCCTGACAGC GTTAGCGCAA CGATCTGCAA GGCGCTCTAT
GCGGACTCTG ATACGTTGGT TCACACCTGC GGAATGGAGA TCGCACCGCT GCGCAGCGAA
AGCTTTGATG TGGTCATCGG CAATGTGCCT TTTGGGAACT ACCGGGTTCA TGACTCGAAG
TTTGATTGCA TGAAGCTGGT AATCCACGAC TACGCGATTG CAAAGTCACT GGACCTCGTG
CGTGCCGGCG GCATTGTGGC CGTGATCACC TCAACGGGAA CGATGGACAA GCCGAAAAGC
AATTTTCGCG AGTACATCGC TGAACGCGCT GATCTGGTGA CCGCTATTCG TTTGCCATCG
GGTGCATTCA CGCGCCTGGG TGAGACGGAT GTGGCGACTG ACATTCTTGT GCTTCGTAAA
AAACCAAAAG TTGCTGACTC TCATGTGGGT CACGACTTCA AGGTGGCTGA AGTGATCAAG
TTGCACGAGT TCGGCAACAT GAATGAGCGC AGTTATGACA CGATCAATGC GTTCTATTCA
CAGAACCAGC GCCAGCTCCT CGGAATGCCC AAGGCCAGCA CAAACCAGTT TGGTGCTTGC
CTCAAGTTCG TGCCGGAGTT GGCCTGGGGT GAACAACTGA AAACCATGTG CAGCGATGCG
ACGTTGGACG GTTGGTACAC GCACGAGGAA CGCAAAGAAA TTCGTGAGAA TTTCGTGGCC
GACATGAGCG GCTTGAAAAC CATGGTGGCC AGCGGCTTTT TCTTTGACGA TCAGGGTCAG
CTGTATTACA TGACCAACCA AAACGCTGAA AGCCAGGCCC ATTTGCCTGA GCCGAAGCGT
CGGCGGATTG AAGGAATGAC GCATATTCGA AATTGCGTCG TGGAACTGCT GGAGTTGGAT
TCGGTGGGTG CGAACAGCAC CTATGAACGC GCCAAACTCA ACCGCTTGTA TGACGCATTC
GTTGTGAAGT ACGACTACCT GATGAAGCCG TATAACCGGC GCCTGTTCAG CCTGGACAGC
CATGCGCCGC TTTTGTGGTC GCTTGAGCGC TACGATGACG AAAATGAAAA GGCCGTGAAA
ACGGATATTT TCAGCAAGTC AACCGTAAGC GCTGCGGTGC TGTCTGATAC GGCTGAATCG
CTGTCCGATG CGATTGCCCT GTCTTACAAC CGCTTCGCGC GGCTGGACCT GGCATTCATG
GCCAAGGCCT TGTCGCTCGG TGAGGACGAG GTGGTGCAAA AGCTGCTTGA CGCTAACCGG
GTCTTTTTTG ATCCAGAAAG CAGAGAGTAT GTGGACTCCG AGGTCTATCT GAGCGGCAAG
GTGCTCGAAA AGCTACTTGT CGCCCGTGCG GCTGCAGAAG GCGACGAACG TTACATGCTC
AATGTTGCTG CCCTTGAAGC GGTGGTGCCG GCAACGGTGC CGCTGAGCAA GGTCAGCATC
CAGTTGGGTG TGCCATGGAT CGGGCAAGAG GATGTGCAGG CCTTTGTCGA TGAAATCGTG
ACCCTGGATG CCGAAAAGGT CCAAGACTAC AACGACATTA AAGCTGTGAC AGTTACGCAA
GTGATTGGCA TGGCAGTATG GTCGGTGACG ATGGGGAATC GATTTCAAAA GGAAACCAGG
TATAGCGGTG ATTGGGGAAC AGCGCATAGG CCATTTGATG ACCTGCTGAG CGACTTGCTC
AATCAGCGCA GCACCACGGT TTACATGGAA ATTGAAGTCG AGCCGGGCAA GACAAAGCGC
ATCGTTAACA AGGACGAGAC GCTGGCGGCA CGCGACAAAG CCGAGAAGAT CCAGGCAGCA
TTTACCTCAT GGGTCTATGC AGACCCGGAG CGTGTCCAAC GGCTGGAGTT CACCTACAAC
AGCAAATTCA ACGGGACACT CAACCGTGAA TTCGATGGCG CGCACTTGGT GGTGCCGGGG
CTGAGTTCGG CTGTCAAGCT GCGCTCGGAC CAACTGGACG GCATTTGGGC CGGTTTGATC
GGCGGCAACA AGCTTTACGC TTATGCCGTG GGTGGCGGCA AGACGCTGAT TACCATTTGC
CTTGCGCAGA TGATGAAGCG TCTGGGTTTT GCCAAGAAGC CGACCATCGT GGTGCCCAAC
CACATGCTTG AAGAGTTTGC GGGACAGTAT GCGAGGGCTT TCCCTCGTGC ACGAATCCTG
GCGGCCAGTA AAGAAGACCT GGAGGGCGAC AAGCGCCGGG TACTGATGAT GAGATTGGCA
ATGGAGGATT GGGATTGCAT CATCATCACG CACGGTTCGT TCGGAAAAAT TGCACTCTCT
AAACAAGTTG TACAGGATTT CGCAGACGAG GCCGGTGAAA AAATCGATGC CATGATCTCA
GGCTCGGATG ATCGGAACGT GGTGCGCGAG GCCGTTCGGC AAAAGAAGAC TGTCATTGCG
AAAGTGATGG CGCTGGCTGA AAAGGGCAAG AAAGACGATG GGGTTTTGAC TTTTGACCAA
CTGGGCATTG ATCAGTTGCT GGTCGATGAA GCCGACCTTT TCAAGAATTT GTGGTTTCAA
ACAAAGAAAA CACGGGTTCC CGGACTGAGC AGCGCTTGTA GTGGTCGCGC TTTGGATTTA
TTTCTGAAGT CGCGCATCAT TTTCGAGCGC CGCAAGGACG GATTTGGTCT AGTTTTTGCC
ACAGCAACGC CGATCGCCAA CACGATTGGC GAAATGTTCA TCATGCAGAC CTACTTGCAG
CCTGACCGCC TCAAAGAGTT GGGAATCGAT GGGTTCGATG CATGGGCGGC TAACTTTGCC
CGTGAAGTGA CTTCCATCGA GGTGACGCCC GATGGAGGTG GCTACCGGAT GCACACACGT
TTTTCCCAAT TCGTGAACGT GCCAGAGTTG ATGCTGATTT TCAAAGAAGT CGCATTGATT
CGAACCAAGG CTATGCTGGC GCTTCCAGAG CCAAAAGTCG CTGGTGGGCG TCATTGCATT
GTTGCCGCGC GTGCATCTGA AGCTCAAAAG GCCTATGTGC AAAAACTCGT GGACAGGGCT
GCGGCTATCC GTGAAGGAAA AGTCAAGCCG CATGAAGACA ACATGCTGTG CGTGACAGGT
GACGGCCGCA GGGCCGCCCT GGATATGCGC TGTGTGGATG GCTTGGAAAT GGACCACGCA
GGCAGTAAGT TGAATGCCTG TATTGAAAAT GTCTATCGAC ATTGGGCTGA AGGCCGCGAG
AAAAAGCTTA CCCAGCTTGT ATTTTGCGAC TTGAGCACTC CGAAGGCACA TGGCTTTTCG
GTCTATACCG ACATGCGTGA AAAGTTAGTT TTAATGGGCG TGCCGGTTGA AGAAATCGCG
TTCGCTCAGG ACTACAAGAC GACAGCGCAA AAGGGTGAGC TTCACCGCAA GGTTCGCTCA
GGCCGTATCC GTATCCTGCA GGGCTCTACA GAGCTGATGG GGTTCGGTAC CAATGTGCAG
GATCGACTGG TGGCAGAGCA CCATCTGGAC GCGCCATGGC GTCCGCGTGA CGTTGAGCAG
CGGGACGGCC GCATCATCAG ACAGGGCAAC CTGAATGAAG AGGTGTTCAT CTACCGCTAC
GTCACGGAAT CGACGTTTGA TGCCTACATG TGGCAAACGC TCGAACGCAA GGCCGGCTTC
ATCGCCCAAG TGATGGAGGG AAAAACAGAA ATGCGTAGTG TTGAAGATGT GACCAGCCAG
GCGTTGAGCT TTGCTGAAGT CAAGGCAATT GCCTCGGGTA ACCCCTTGGT GATCGAGAAG
GCGGGTGTCG ATGCGGAAGT GTCGAAAATC CTCTCACTCA AAGCTGCTTG GCGCTCGGAC
CGCGAAATCG TGCTCTCACG ACTCGCGAAC TGTGTGCAAA GCATCGACTA CAGCAAAAAG
CGGATTCAGG CGTTTGAAGG CGACCTTGGA TCGATTGGGA ACGCAAGCGA AGTTACGCTG
GGTGGAATGG TGCATAGTGC GTCAGATAAG ACTGGGAAGT CTGTGATGGC GCACCTGGCA
TCGATAAAGG CTAGCGTAAC GACCAAGGAG CATCAGTGGA GGTCGTTTGA CGCCCTGCTG
GCCGTTGGCA ACATGAGCAT CGGGTTGGAA CTGCATGGAA AAATTGGCAG CGCAAGTTAC
AAGTTCTTTG CAAAGGGATC CTCTGGCGTG AGCTTTGAGT TCACGCTTCC CTACGGTGCG
AAAGACATCG AAATCTTTTT GAGGTCTAAA CACCTTGAAA CGGATTTGAT GGACAAGCTA
AGTTGGTTCA GAACCCGGCT CATTGCGGAC GAGGCTGAGT TGATCAACCT GAAACGTGGC
GCTGAAAAAC CATTCGAGTA CGCTGAAAGG CTCGAAGCAG CGCTGAACAA GCAAGAAGAG
ATCGACAAGT CGTTGGACCT GAGGGCTGAC GATGTTTCGA CGCTGTTCAT GGAAGAAGAA
AAGCAAGAAG AGGCCGAAAT GGCTTCATAA
 
Protein sequence
MKKPKVISVN QMSLFGDVIE IEEPPASVAV LKPVAKAVET LTKRREMFVL ESKYFAQLTG 
PAAKVKANLA AVKMAMQGGK KSLEEKAVIV AYSGWGGISA MFADNGDFEA QRLEFLEMVG
EKSYAQARDS VLTAYYTEPE VIQAMWGLVQ KMGFKGGKVL EPSAGTGNFI GAMPVALREA
STITMVEPDS VSATICKALY ADSDTLVHTC GMEIAPLRSE SFDVVIGNVP FGNYRVHDSK
FDCMKLVIHD YAIAKSLDLV RAGGIVAVIT STGTMDKPKS NFREYIAERA DLVTAIRLPS
GAFTRLGETD VATDILVLRK KPKVADSHVG HDFKVAEVIK LHEFGNMNER SYDTINAFYS
QNQRQLLGMP KASTNQFGAC LKFVPELAWG EQLKTMCSDA TLDGWYTHEE RKEIRENFVA
DMSGLKTMVA SGFFFDDQGQ LYYMTNQNAE SQAHLPEPKR RRIEGMTHIR NCVVELLELD
SVGANSTYER AKLNRLYDAF VVKYDYLMKP YNRRLFSLDS HAPLLWSLER YDDENEKAVK
TDIFSKSTVS AAVLSDTAES LSDAIALSYN RFARLDLAFM AKALSLGEDE VVQKLLDANR
VFFDPESREY VDSEVYLSGK VLEKLLVARA AAEGDERYML NVAALEAVVP ATVPLSKVSI
QLGVPWIGQE DVQAFVDEIV TLDAEKVQDY NDIKAVTVTQ VIGMAVWSVT MGNRFQKETR
YSGDWGTAHR PFDDLLSDLL NQRSTTVYME IEVEPGKTKR IVNKDETLAA RDKAEKIQAA
FTSWVYADPE RVQRLEFTYN SKFNGTLNRE FDGAHLVVPG LSSAVKLRSD QLDGIWAGLI
GGNKLYAYAV GGGKTLITIC LAQMMKRLGF AKKPTIVVPN HMLEEFAGQY ARAFPRARIL
AASKEDLEGD KRRVLMMRLA MEDWDCIIIT HGSFGKIALS KQVVQDFADE AGEKIDAMIS
GSDDRNVVRE AVRQKKTVIA KVMALAEKGK KDDGVLTFDQ LGIDQLLVDE ADLFKNLWFQ
TKKTRVPGLS SACSGRALDL FLKSRIIFER RKDGFGLVFA TATPIANTIG EMFIMQTYLQ
PDRLKELGID GFDAWAANFA REVTSIEVTP DGGGYRMHTR FSQFVNVPEL MLIFKEVALI
RTKAMLALPE PKVAGGRHCI VAARASEAQK AYVQKLVDRA AAIREGKVKP HEDNMLCVTG
DGRRAALDMR CVDGLEMDHA GSKLNACIEN VYRHWAEGRE KKLTQLVFCD LSTPKAHGFS
VYTDMREKLV LMGVPVEEIA FAQDYKTTAQ KGELHRKVRS GRIRILQGST ELMGFGTNVQ
DRLVAEHHLD APWRPRDVEQ RDGRIIRQGN LNEEVFIYRY VTESTFDAYM WQTLERKAGF
IAQVMEGKTE MRSVEDVTSQ ALSFAEVKAI ASGNPLVIEK AGVDAEVSKI LSLKAAWRSD
REIVLSRLAN CVQSIDYSKK RIQAFEGDLG SIGNASEVTL GGMVHSASDK TGKSVMAHLA
SIKASVTTKE HQWRSFDALL AVGNMSIGLE LHGKIGSASY KFFAKGSSGV SFEFTLPYGA
KDIEIFLRSK HLETDLMDKL SWFRTRLIAD EAELINLKRG AEKPFEYAER LEAALNKQEE
IDKSLDLRAD DVSTLFMEEE KQEEAEMAS