Gene Aave_4210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_4210 
Symbol 
ID4666327 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp4664965 
End bp4665702 
Gene Length738 bp 
Protein Length245 aa 
Translation table11 
GC content70% 
IMG OID639825396 
ProductHAD family hydrolase 
Protein accessionYP_972524 
Protein GI120612846 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1877] Trehalose-6-phosphatase 
TIGRFAM ID[TIGR00685] trehalose-phosphatase
[TIGR01484] HAD-superfamily hydrolase, subfamily IIB 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.418439 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAAAGC CACCGTTGCT GACCGCGCGC CACGCGCTGT TTCTCGACTT CGACGGCACG 
CTTGCCGACA TTGCACCGCA CCCCGATGCG GTGCAGGTGC ATCCGGGCGT GGTGCCGGCC
CTGCGGGTCC TGCACGAACG CCTGGAGGGC GCCCTGGCCA TCGCCACGGG CCGCACGCAG
GCCGATATCG ATCACTTCCT CAGCCCCCTG CAGCTGCCGC TGGCCTGCGA ACACGGCGCC
CAGTACCGGA TGGTCAACGG CGTCATCGGC GGCGTGCCGG CCCCCGATCT CGCACCCGTG
GTGCGTGCCG TGCAGCCGCT GCTGGACCGT TATCCAGCGC TGGTGCTCGA ACGCAAGAGC
GCGGGCATGG CGCTGCACTA CCGCCAGGCG GTGGAGCTGG AGCCGCTGTG CCGCGCCGCG
CTCGAGCATG CGCTGGCGCA GGCGCCCGGC CTGGAACTCA TGCAGGGCAA GTGCGTGCTG
GAGATCAAGC CCTCCGGGCC GAACAAGGGC CGGGCGATCG CCGACTTCAT GCGCCAGACG
CCGTTCGCGG GCCGCATCCC CGTGTTCGCG GGAGACGACG TGACCGATGA ATACGGCTTC
GATGCGGCCC AGGCGCTCGG CGGCATCGGC ATCAAGATCG GAACCGGCGA CACCCGGGCG
CTGGCACGCT GCGGCGACAC CACGGAGCTG CGCGAGTGGC TGTTCCAGAT GGCATCGCCG
GAAGGGTTTC CCGCATGA
 
Protein sequence
MQKPPLLTAR HALFLDFDGT LADIAPHPDA VQVHPGVVPA LRVLHERLEG ALAIATGRTQ 
ADIDHFLSPL QLPLACEHGA QYRMVNGVIG GVPAPDLAPV VRAVQPLLDR YPALVLERKS
AGMALHYRQA VELEPLCRAA LEHALAQAPG LELMQGKCVL EIKPSGPNKG RAIADFMRQT
PFAGRIPVFA GDDVTDEYGF DAAQALGGIG IKIGTGDTRA LARCGDTTEL REWLFQMASP
EGFPA