Gene Aave_4170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_4170 
Symbol 
ID4667834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp4622786 
End bp4623277 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content66% 
IMG OID639825357 
Productpeptidoglycan-binding LysM 
Protein accessionYP_972485 
Protein GI120612807 
COG category[S] Function unknown 
COG ID[COG1652] Uncharacterized protein containing LysM domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.301843 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.177746 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGACTTT TCAGCTTCGT CAAGGAAGCC GGGGAAAAGC TGTTCGGGGG CAAGGAGGCG 
CATGCCGCGC CGGCCGCTGC GCCCGCCGCA CCGAGCCAGG ACGAACTCAA CGCCACCGCC
GGCAAGGCGA TCGAGACGTA CATCGCCTCC CAGAACCTGG GCGTGCGCGA TGTGCGGGTG
ACGTTCGCGG GCCCGGAGGG CAAGGTGACC GTGCAAGGCG AGGCGCCGAC CCAGGCCGCC
AAGGAAAAGG TCACGCTGTG CTGCGGCAAT GTGTCCGGCG TGACGAGCGT GGACAACCAG
ATGGCCGTGC AGGCGCCCGA GGCGGAAGCG CAATACCACG ACGTGGTGCG CGGCGACACG
CTGTCGGCGA TTGCCAAGAA GTACTACGGC GATGCCAACA AGTACCCGCG CATCTTCGAG
GCCAACCAGC CCATGCTGAC GCATCCGGAC AAGATCTATC CGGGCCAGAA GCTGCGCATT
CCGCCGCTGT AA
 
Protein sequence
MGLFSFVKEA GEKLFGGKEA HAAPAAAPAA PSQDELNATA GKAIETYIAS QNLGVRDVRV 
TFAGPEGKVT VQGEAPTQAA KEKVTLCCGN VSGVTSVDNQ MAVQAPEAEA QYHDVVRGDT
LSAIAKKYYG DANKYPRIFE ANQPMLTHPD KIYPGQKLRI PPL