Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_4170 |
Symbol | |
ID | 4667834 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | + |
Start bp | 4622786 |
End bp | 4623277 |
Gene Length | 492 bp |
Protein Length | 163 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639825357 |
Product | peptidoglycan-binding LysM |
Protein accession | YP_972485 |
Protein GI | 120612807 |
COG category | [S] Function unknown |
COG ID | [COG1652] Uncharacterized protein containing LysM domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.301843 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.177746 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGACTTT TCAGCTTCGT CAAGGAAGCC GGGGAAAAGC TGTTCGGGGG CAAGGAGGCG CATGCCGCGC CGGCCGCTGC GCCCGCCGCA CCGAGCCAGG ACGAACTCAA CGCCACCGCC GGCAAGGCGA TCGAGACGTA CATCGCCTCC CAGAACCTGG GCGTGCGCGA TGTGCGGGTG ACGTTCGCGG GCCCGGAGGG CAAGGTGACC GTGCAAGGCG AGGCGCCGAC CCAGGCCGCC AAGGAAAAGG TCACGCTGTG CTGCGGCAAT GTGTCCGGCG TGACGAGCGT GGACAACCAG ATGGCCGTGC AGGCGCCCGA GGCGGAAGCG CAATACCACG ACGTGGTGCG CGGCGACACG CTGTCGGCGA TTGCCAAGAA GTACTACGGC GATGCCAACA AGTACCCGCG CATCTTCGAG GCCAACCAGC CCATGCTGAC GCATCCGGAC AAGATCTATC CGGGCCAGAA GCTGCGCATT CCGCCGCTGT AA
|
Protein sequence | MGLFSFVKEA GEKLFGGKEA HAAPAAAPAA PSQDELNATA GKAIETYIAS QNLGVRDVRV TFAGPEGKVT VQGEAPTQAA KEKVTLCCGN VSGVTSVDNQ MAVQAPEAEA QYHDVVRGDT LSAIAKKYYG DANKYPRIFE ANQPMLTHPD KIYPGQKLRI PPL
|
| |