Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_4150 |
Symbol | |
ID | 4668602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | - |
Start bp | 4603617 |
End bp | 4606106 |
Gene Length | 2490 bp |
Protein Length | 829 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 639825337 |
Product | general secretion pathway protein D |
Protein accession | YP_972465 |
Protein GI | 120612787 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0456168 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000162446 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTTTTT ATCGATACGC TCTGACCTCC ATCGCTATGG CCGTCTGCCA GTTGGCTGCG GCACAGACCG CCGCGCCCGG TGGTGCCCCC TCCACCAACG TCGTTACCGA ATCGGGAAGT GCTCCAGCGG CCGTCGGATC GGGGGCTGCC ACCGACGGCA CGGCAGCAGG CAAGGCCGGT GGCGGCGCCG CAGCAGGCGA CGACCAGGGC GGTCAGCCCC GTATCCTGCG CGGCACCGAC AAGGTGCTGG CCGATCCCAA GCCCGTCCCG GCCTTGACCG GTGCGCCCAT GACCTTCAGC TTCGAGGAGG CTCCTGTGGC GGAGGTCGTC CGCACGGTGC TGGGAGATAT CGCCAAGGCG AATTACGTGC TGCATCCCCC GCTGAACGGC ACGGTCACGC TGGCCACCCG CAATCCCATT CCTCCGGACC AGGCCATGTT CCTGCTGGAG AGCGCGCTGC AGGCCAATGG CCTGGGGATG ATCCGGGATG CACGGGGCAC CTACCATGTC GGTCGCCCGG ACGCCCTGCG CGCCATCGGC GGCACGCTGC GCCAGTTCCG CAGCGGCGAG CCCCTGCCTC CCGGCAACGG GGCCGTCATC ATTCCGCTGC AGTACATCGG CGCGGCCGAG ATGGCCTCCA TCCTGCGGCC CATGGTGACG CCCGATGCGA TCGTCCGCGT GGACAACCTG CGCAACGTTC TGGTGATGTC GGGAACGCGC ACCCAGGCGG AAGCCTGGAT GGATCTGGTC AACACCTTCG ACGTGGATCT GCTCAAGGGC ATGTCCGTAG GCGTGTTCCC GCTCAAGTAC GCCTCCGTGA AGGAGGTCGA GGCTGCGCTG CGCGTGGTGA GCGGTGGCGG CGGCAGCGCG CCCGGGGCCG TTCCGGGCAC GCCGGCGGGT GCTGCCGCGG CAGCGGCTGC GGGTGCGAAC CAGGCCAATG CCGCTCCCGT GACGCTCGGA GAGGGCAATC CGCTGTTCGG CGCGCTGCGC ATCATGCCGA TCGAGCGCAT CAACAGCATC CTCGTGGTCA CGCCCCGCGC CGCCTATCTG GACGAGGCTC GCCGCTGGAT CGAAAAGCTC GACCAGCCCA GCGACAACGG CGCGGAGCCG CAACTGTTCA TCTACCACGT GCAGAACGGC AACGCGAAAC ACTTGGCCGG CGTGCTGAGC GGCATCTTCG GCGGCCAAGC CGGAGGCAGT GTCGCGAACA GCGGGGTGGC GCCCGGCCTC GGTGGGACGT CGTCCAACTC GTACGGCTCC TCTGGCTTCG GCAACTCGTC CTTCAACAAC GGCTTCGGCT CGTCAGGGTT CGGCAACTCG CCATTTGGTG GCGGCTTCGG CAGCAGCGGA GGTTTCGGCA GCAGCGGTGG CTTCGGCAGC AGCGGAGGTT TCGGTGGGGG CTTCAGCAGC GGCAGCGGCT TCGGTTCGTT CCAGGGTAAC CGCGGCAACC AGAACCAGGC GGGCACTCAG CAGGGAGCGG TCAGCGCCAA CCTCGGTGGG GTCCGGCTGA TGGCCGATGA GCTCAACAAT TCGGTGCTGG TCTGGGGGAC GAAGGCCAAC TACATGAAGA TCGAGGCCAC CCTGAAGCGG CTCGACCTGC CCCCGACGCA GGTGCTGATC GAGGCATCGA TCGTGGAAGT CACCCTGGAC GACACGCTCC AATACGGCTT GCAATGGGCA TTCAACAATG CTGGGCCCTC GAATCTCAAC GGGGCGGGCC AGTTGCTGAC CAACGGTCCC AGCGATAAAA CGCCTATCGG CAGTTCCATA CCGACGCCGA CGAGCTCCGG CTTCTCGTAC GCTCTGTCCA ATTCTCTGGG CAGTGTCCGT GTCGTGCTCA ATGCCCTGGC CACCAAGCGG CTGCTCAAGG TGATCTCGAG CCCCTCCCTG ATGGTGCTGG ACAACCACAC GGCCATGATG AGCGTGGGTA ACCAGCAGCC GGTAAAGACG GGCTCGTTGA TCACCTCCGT CAGTGGTGGA AACTCCGTAG CCGACACGAT CCAGTACCGC GATACAGGGG TGAGTCTGGC CGTCACGCCT TCCGTGAACG CTGGCAACCT GGTGACCATG CAGATCGACC AGGCCGTGAC GGATGCCGTG GCGGACAATT CGGGAAGCAT TTCCCTGCAA CCTGTGTTCC AGCAGCGCCA GATCACCAGC AAGGTGGCCG TGCGCTCGGG TGAAGCCATC GTGCTCGGCG GCCTGATTCG CGATACCAGC AATTCGTCCA AATCCGGTGT CCCGCTGCTG CAGGACATTC CCCTGGTTGG CAGCCTCTTC AGCAACAACG GCAAGACGGG CAATCGCACG GAACTGCTGG TGGTGATCAC GCCCAAAGTG GTGCGGACCG ACATCGACAT CCGCGAGGTC AGCGATGAAC TGCGCGACCG CCTGAAGGGG TTGCAGATCA TCGAGCTGAA GGAGAACGGA CGCACCCCTG CTGCGCCGTC GGGTACGTCG ACAACGATCC AGCCATTGCC TCCGCAGTGA
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Protein sequence | MIFYRYALTS IAMAVCQLAA AQTAAPGGAP STNVVTESGS APAAVGSGAA TDGTAAGKAG GGAAAGDDQG GQPRILRGTD KVLADPKPVP ALTGAPMTFS FEEAPVAEVV RTVLGDIAKA NYVLHPPLNG TVTLATRNPI PPDQAMFLLE SALQANGLGM IRDARGTYHV GRPDALRAIG GTLRQFRSGE PLPPGNGAVI IPLQYIGAAE MASILRPMVT PDAIVRVDNL RNVLVMSGTR TQAEAWMDLV NTFDVDLLKG MSVGVFPLKY ASVKEVEAAL RVVSGGGGSA PGAVPGTPAG AAAAAAAGAN QANAAPVTLG EGNPLFGALR IMPIERINSI LVVTPRAAYL DEARRWIEKL DQPSDNGAEP QLFIYHVQNG NAKHLAGVLS GIFGGQAGGS VANSGVAPGL GGTSSNSYGS SGFGNSSFNN GFGSSGFGNS PFGGGFGSSG GFGSSGGFGS SGGFGGGFSS GSGFGSFQGN RGNQNQAGTQ QGAVSANLGG VRLMADELNN SVLVWGTKAN YMKIEATLKR LDLPPTQVLI EASIVEVTLD DTLQYGLQWA FNNAGPSNLN GAGQLLTNGP SDKTPIGSSI PTPTSSGFSY ALSNSLGSVR VVLNALATKR LLKVISSPSL MVLDNHTAMM SVGNQQPVKT GSLITSVSGG NSVADTIQYR DTGVSLAVTP SVNAGNLVTM QIDQAVTDAV ADNSGSISLQ PVFQQRQITS KVAVRSGEAI VLGGLIRDTS NSSKSGVPLL QDIPLVGSLF SNNGKTGNRT ELLVVITPKV VRTDIDIREV SDELRDRLKG LQIIELKENG RTPAAPSGTS TTIQPLPPQ
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