Gene Aave_4150 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_4150 
Symbol 
ID4668602 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp4603617 
End bp4606106 
Gene Length2490 bp 
Protein Length829 aa 
Translation table11 
GC content65% 
IMG OID639825337 
Productgeneral secretion pathway protein D 
Protein accessionYP_972465 
Protein GI120612787 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1450] Type II secretory pathway, component PulD 
TIGRFAM ID[TIGR02517] general secretion pathway protein D 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0456168 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000162446 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTTTTT ATCGATACGC TCTGACCTCC ATCGCTATGG CCGTCTGCCA GTTGGCTGCG 
GCACAGACCG CCGCGCCCGG TGGTGCCCCC TCCACCAACG TCGTTACCGA ATCGGGAAGT
GCTCCAGCGG CCGTCGGATC GGGGGCTGCC ACCGACGGCA CGGCAGCAGG CAAGGCCGGT
GGCGGCGCCG CAGCAGGCGA CGACCAGGGC GGTCAGCCCC GTATCCTGCG CGGCACCGAC
AAGGTGCTGG CCGATCCCAA GCCCGTCCCG GCCTTGACCG GTGCGCCCAT GACCTTCAGC
TTCGAGGAGG CTCCTGTGGC GGAGGTCGTC CGCACGGTGC TGGGAGATAT CGCCAAGGCG
AATTACGTGC TGCATCCCCC GCTGAACGGC ACGGTCACGC TGGCCACCCG CAATCCCATT
CCTCCGGACC AGGCCATGTT CCTGCTGGAG AGCGCGCTGC AGGCCAATGG CCTGGGGATG
ATCCGGGATG CACGGGGCAC CTACCATGTC GGTCGCCCGG ACGCCCTGCG CGCCATCGGC
GGCACGCTGC GCCAGTTCCG CAGCGGCGAG CCCCTGCCTC CCGGCAACGG GGCCGTCATC
ATTCCGCTGC AGTACATCGG CGCGGCCGAG ATGGCCTCCA TCCTGCGGCC CATGGTGACG
CCCGATGCGA TCGTCCGCGT GGACAACCTG CGCAACGTTC TGGTGATGTC GGGAACGCGC
ACCCAGGCGG AAGCCTGGAT GGATCTGGTC AACACCTTCG ACGTGGATCT GCTCAAGGGC
ATGTCCGTAG GCGTGTTCCC GCTCAAGTAC GCCTCCGTGA AGGAGGTCGA GGCTGCGCTG
CGCGTGGTGA GCGGTGGCGG CGGCAGCGCG CCCGGGGCCG TTCCGGGCAC GCCGGCGGGT
GCTGCCGCGG CAGCGGCTGC GGGTGCGAAC CAGGCCAATG CCGCTCCCGT GACGCTCGGA
GAGGGCAATC CGCTGTTCGG CGCGCTGCGC ATCATGCCGA TCGAGCGCAT CAACAGCATC
CTCGTGGTCA CGCCCCGCGC CGCCTATCTG GACGAGGCTC GCCGCTGGAT CGAAAAGCTC
GACCAGCCCA GCGACAACGG CGCGGAGCCG CAACTGTTCA TCTACCACGT GCAGAACGGC
AACGCGAAAC ACTTGGCCGG CGTGCTGAGC GGCATCTTCG GCGGCCAAGC CGGAGGCAGT
GTCGCGAACA GCGGGGTGGC GCCCGGCCTC GGTGGGACGT CGTCCAACTC GTACGGCTCC
TCTGGCTTCG GCAACTCGTC CTTCAACAAC GGCTTCGGCT CGTCAGGGTT CGGCAACTCG
CCATTTGGTG GCGGCTTCGG CAGCAGCGGA GGTTTCGGCA GCAGCGGTGG CTTCGGCAGC
AGCGGAGGTT TCGGTGGGGG CTTCAGCAGC GGCAGCGGCT TCGGTTCGTT CCAGGGTAAC
CGCGGCAACC AGAACCAGGC GGGCACTCAG CAGGGAGCGG TCAGCGCCAA CCTCGGTGGG
GTCCGGCTGA TGGCCGATGA GCTCAACAAT TCGGTGCTGG TCTGGGGGAC GAAGGCCAAC
TACATGAAGA TCGAGGCCAC CCTGAAGCGG CTCGACCTGC CCCCGACGCA GGTGCTGATC
GAGGCATCGA TCGTGGAAGT CACCCTGGAC GACACGCTCC AATACGGCTT GCAATGGGCA
TTCAACAATG CTGGGCCCTC GAATCTCAAC GGGGCGGGCC AGTTGCTGAC CAACGGTCCC
AGCGATAAAA CGCCTATCGG CAGTTCCATA CCGACGCCGA CGAGCTCCGG CTTCTCGTAC
GCTCTGTCCA ATTCTCTGGG CAGTGTCCGT GTCGTGCTCA ATGCCCTGGC CACCAAGCGG
CTGCTCAAGG TGATCTCGAG CCCCTCCCTG ATGGTGCTGG ACAACCACAC GGCCATGATG
AGCGTGGGTA ACCAGCAGCC GGTAAAGACG GGCTCGTTGA TCACCTCCGT CAGTGGTGGA
AACTCCGTAG CCGACACGAT CCAGTACCGC GATACAGGGG TGAGTCTGGC CGTCACGCCT
TCCGTGAACG CTGGCAACCT GGTGACCATG CAGATCGACC AGGCCGTGAC GGATGCCGTG
GCGGACAATT CGGGAAGCAT TTCCCTGCAA CCTGTGTTCC AGCAGCGCCA GATCACCAGC
AAGGTGGCCG TGCGCTCGGG TGAAGCCATC GTGCTCGGCG GCCTGATTCG CGATACCAGC
AATTCGTCCA AATCCGGTGT CCCGCTGCTG CAGGACATTC CCCTGGTTGG CAGCCTCTTC
AGCAACAACG GCAAGACGGG CAATCGCACG GAACTGCTGG TGGTGATCAC GCCCAAAGTG
GTGCGGACCG ACATCGACAT CCGCGAGGTC AGCGATGAAC TGCGCGACCG CCTGAAGGGG
TTGCAGATCA TCGAGCTGAA GGAGAACGGA CGCACCCCTG CTGCGCCGTC GGGTACGTCG
ACAACGATCC AGCCATTGCC TCCGCAGTGA
 
Protein sequence
MIFYRYALTS IAMAVCQLAA AQTAAPGGAP STNVVTESGS APAAVGSGAA TDGTAAGKAG 
GGAAAGDDQG GQPRILRGTD KVLADPKPVP ALTGAPMTFS FEEAPVAEVV RTVLGDIAKA
NYVLHPPLNG TVTLATRNPI PPDQAMFLLE SALQANGLGM IRDARGTYHV GRPDALRAIG
GTLRQFRSGE PLPPGNGAVI IPLQYIGAAE MASILRPMVT PDAIVRVDNL RNVLVMSGTR
TQAEAWMDLV NTFDVDLLKG MSVGVFPLKY ASVKEVEAAL RVVSGGGGSA PGAVPGTPAG
AAAAAAAGAN QANAAPVTLG EGNPLFGALR IMPIERINSI LVVTPRAAYL DEARRWIEKL
DQPSDNGAEP QLFIYHVQNG NAKHLAGVLS GIFGGQAGGS VANSGVAPGL GGTSSNSYGS
SGFGNSSFNN GFGSSGFGNS PFGGGFGSSG GFGSSGGFGS SGGFGGGFSS GSGFGSFQGN
RGNQNQAGTQ QGAVSANLGG VRLMADELNN SVLVWGTKAN YMKIEATLKR LDLPPTQVLI
EASIVEVTLD DTLQYGLQWA FNNAGPSNLN GAGQLLTNGP SDKTPIGSSI PTPTSSGFSY
ALSNSLGSVR VVLNALATKR LLKVISSPSL MVLDNHTAMM SVGNQQPVKT GSLITSVSGG
NSVADTIQYR DTGVSLAVTP SVNAGNLVTM QIDQAVTDAV ADNSGSISLQ PVFQQRQITS
KVAVRSGEAI VLGGLIRDTS NSSKSGVPLL QDIPLVGSLF SNNGKTGNRT ELLVVITPKV
VRTDIDIREV SDELRDRLKG LQIIELKENG RTPAAPSGTS TTIQPLPPQ