| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4145 |
|---|
| Symbol | |
|---|
| ID | 4668498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 4597855 |
|---|
| End bp | 4599144 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 639825332 |
|---|
| Product | ABC transporter-related protein |
|---|
| Protein accession | YP_972460 |
|---|
| Protein GI | 120612782 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000179677 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCGC TGCAGACATC GTCCGAGACA GTGCTGCAGG TGAAGAATCT GGGCAAGGAG
TACCGCATCT ATGCGTCTCC CCGCCAGCGC CTCAAGTCGC TCATCACCGG CCGTTCCCAC
CACCGCAGCC ACTGGGCGCT GAAGGATGTG TCCTTCGAAT TGCGGCGTGG CCAGTGTATC
GGCGTGATTG GTGACAATGG TGCCGGCAAG AGTTCGCTGC TGAAACTGCT GGCCGGAACG
CTTCAGCCAT CGACCGGTTC GATCGAGCGC GTAGGGCGGG TGACGGCCAT TCTGGAGCTC
GGTGCCGGCT TCCATCCGGA CTTCAGCGGA CGGGACAATC TGTACTTCGG CGGCAGCCTG
ATAGGCATCG ACCGGGAGAC GATGCAGCGG CTGGAGCCCG AAATCATCGA GTTCAGTGAG
CTTGGCCATG CGCTGGACCG GCCCGTGAAG ACCTACTCCT CGGGCATGGC AGTGCGCCTC
GCGTTTGCGC TGGTCACGGC AGTGCAGCCT GACGTGCTCA TCATCGACGA GGCGCTGGCG
GTGGGAGACC AGCATTTCCA GAAGAAATGC GTGGATCGCA TCATGGCCTT CCGCGATGCA
GGCTGCACCA TCCTGTTCTG CTCCCACAGT CCCTATCACA TACGGCATCT GTGCGACGTG
GCCTTGTGGC TGAAGGATGG CTGCGTGGAG CAGTTCGGGC CGACGGAGCC CGTGCTGGCC
GCCTACGATC TGCACACCCG GCTGCGTGAC GGCCAGCCCC AGGAGATGCT CCCACAGGGG
GCGGAGCCTG CCCCGTCTCT GGCGCCGCCC GGCGAATCAA TGCCCTCCGT TGCCGGAGAG
GGCCATGCGC GGCGGGAACG CGCCGCTGGC GGAGACTCCG GCAGTGCCTG TATCGTTTCC
GTGGATGTCA AGGATCTCGC CGAGCCGCAG GGCGAGCGGC CCGGTACGTT GCGGAGCAGC
GACCTGGTGG TGTCCATTGT GGTGCGTGGG CGCGGGGACG AGCGTCCGAA CATCGGCTTC
ATGATCGAGC AGTCCCGAGG CGTGGGCATC ACCTCGCTGG GCACCCATGA AGAGGGCGCG
GAGCCGGTCC GGCTGGAGGA CGGCTCCTGG CGGTCGGTCC TGACCTTCCC CGAGTTGCCG
CTCCATACGG GCGACTACGT CATCAGTGTC TATCTCTTCG ACGAGACGGG ACTGGTGGTG
TATGACGAAT GGTTCCAGTT CCTGCATTTC CATTTTTCTT TTCCAAAGCC CATGCCGGGC
CTTGTCCGTC TGCCGCACCG CTGGGAATGA
|
|---|
| Protein sequence | MSPLQTSSET VLQVKNLGKE YRIYASPRQR LKSLITGRSH HRSHWALKDV SFELRRGQCI
GVIGDNGAGK SSLLKLLAGT LQPSTGSIER VGRVTAILEL GAGFHPDFSG RDNLYFGGSL
IGIDRETMQR LEPEIIEFSE LGHALDRPVK TYSSGMAVRL AFALVTAVQP DVLIIDEALA
VGDQHFQKKC VDRIMAFRDA GCTILFCSHS PYHIRHLCDV ALWLKDGCVE QFGPTEPVLA
AYDLHTRLRD GQPQEMLPQG AEPAPSLAPP GESMPSVAGE GHARRERAAG GDSGSACIVS
VDVKDLAEPQ GERPGTLRSS DLVVSIVVRG RGDERPNIGF MIEQSRGVGI TSLGTHEEGA
EPVRLEDGSW RSVLTFPELP LHTGDYVISV YLFDETGLVV YDEWFQFLHF HFSFPKPMPG
LVRLPHRWE
|
|---|
| |