| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_4000 |
|---|
| Symbol | |
|---|
| ID | 4669891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | + |
|---|
| Start bp | 4437358 |
|---|
| End bp | 4439526 |
|---|
| Gene Length | 2169 bp |
|---|
| Protein Length | 722 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639825188 |
|---|
| Product | TonB-dependent siderophore receptor |
|---|
| Protein accession | YP_972316 |
|---|
| Protein GI | 120612638 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
|---|
| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCTTT TCCGTCACCC TTCTTTCAAG GCCCTGCCCC TCGCGATGGC CGCTGCGGCC
CTCGTGGCAG GCGGCGCGCG CGCGCAATCC GGCCCCGCCC CGTCCCCTTC CGGCGACGCC
CAGCTGTCCA CCGTCGATGT CGTCGGCCGC ACCGATTCCG GCACCTACCA GGCCCAGGAA
GCCGCGGACG CCAAGACCGA CCTGCCGCTG CGCGAGCTGC CGCAGTCCGT GCGCGTCATC
ACCCGGCAGG CCATCGACGA CCTCGGTGCC ACGCGACTGG ACGACGTGCT CGACTACGTG
GGCGGGGTCT CGCGCCAGAA CAACTTCGGG GGCCTGTGGG ACAACGTCGC CATCCGAGGC
CTGCCCGGCA ACGAGAACAC CGGCTCGGCC ACTCTGCTCA ACGGCTTCTC CGGCAACCGG
GGCTTCAACG CGCCGCGCGA CATGGCCGGC GTGGAGCGCA TCGAATTCCT GAAGGGCCCG
GCCGCCGCGC TCTACGGCAG CAGCGAACCC GGCGGCACGC TCAACATCGT CACCAAGCGG
CCGAAATGGA AGCCCGCCAA CGCGGTGGAA GCCTATGCAG GCAGCCACGG CTATCGCCGC
GGGGCACTCG ACAGCACCGG TCCGCTGGGC GAGAACCTGG CCTACCGGCT CAACGTGGCG
GTGGAAGACC GGGACAGCTT CCGCGACTTC GTCAGCGCGC AGCGCCAGGT GGTCGCGCCG
GCCTTCACCT GGAAGCTCGG CGGCAGCACC GTGCTGGACT ACAGCGGCGA ATACCTGCGG
CACCGCGCGC CGCTGGACCG GGGCGTGGTG GCGGTCGGCA ACCGGCTCGG CGACGTGCCG
CGCAGCCGCT TCCTGGGCGA GCCGGGCGAC GGCGACGTGA CCGTGCGCAA CACCACCCAC
CAGCTGTCGC TGCTGCACGA GTGGAACGCG CAGTGGCGCA GCCGTTTCGC GCTCTCCTAC
CGCACCACGG GCCTGGACGG GTTCTCCTCC GAGGCCTCGT CCCTGCTGGC CGACGGCACG
CTGCGCCGCC AGCGCCGCTT GCGCGATTTC TCGTCCGACG ACACGGCGCT GCAGGGCGAG
CTGATCGGCA ACCTGCAATG GGGCGACACG CCGCACGAAC TGCTGCTGGG CGTGGAGACC
TACCGCTACA CGCTGGATGC GCGCATGCTG CGCATCAATC CCACGGCCGC CGCGCCCTAC
GCGATCGACA TCCACCAGCC GGTGTACGGG CAACCCCGGC CGGCCCCCGG CCCCAATACG
GACTTCACCG AACGCCAGCG CAACACGGCC CTCTACGTGC AGGACGCGAT CCAGCTGGCG
CCGCAGTGGC GCGTGCTGGC CGGCGCGCGC TTCGACCGCT ACCGGCAGAC CTACGACAAC
CACCGCACCG GCACCACCGA CGGCCAGGAC CCGACCGCCG TCTCCCCGCG CGTGGGCGTG
AGCTGGCTGC CCCATGCGCA GTGGACGGTG TACGCCAACG CGGGCACGTC GTTCCGCCCG
AACAGCGGCT TCACCTCCGC CGTGGGCCGG AGCGGCCTGG CGCTGGATCC GGAGAAGGGC
CGCGCGCTGG AAGTCGGCGT GAAATGGGAG AGCGCGGACC AGCGCCTGGG CGCCACGGCC
GCCCTCTTCG ACATCACCAA GCGCAACATG CTGACCACCG ATCCGGTGGA CAGCAGCTTC
CAGGTCACGG CGGGCAAGGT GCGCAGCCGC GGCCTGGAGT TCGACCTGGC GGGACAGCTC
AGCTCGCACT GGCGCCTGAA CGCCAGCCTG GTGCTGAACG ACGTGGACGT GCTGCGCGAC
AACACGCTCG AGATCGGCAG CCGCCTCATC AACGTGCCGC GCGTGAACGG CAGCCTGCTC
GCGGTGTACG AGGATGCGCT CGCCAGCGGC CAGCGCTATG GCGTGGGAGG CGGCGTCACG
CACGTGGGCC GGCGGCTGGG CGCGGCCCGC ACGCAGGCCG AAGCGCAGGC CGGCACGCCT
GCCTTCGAGC TGCCCGCCTA CACCACGGCG AAAATCGTCG CGTACTGGCG CCTCACGCCC
GCGGTGCGGC TCACGCTGGA CGTGGACAAC GTGTTCGACA AGACCTACTA CGCCACGTCC
GTGAGCCGGC TGTGGGTGAC GCCCGGCAGC GGGCGCACCG TGGCCGTGGG CCTGCAGGCC
CGGTTCTGA
|
|---|
| Protein sequence | MPLFRHPSFK ALPLAMAAAA LVAGGARAQS GPAPSPSGDA QLSTVDVVGR TDSGTYQAQE
AADAKTDLPL RELPQSVRVI TRQAIDDLGA TRLDDVLDYV GGVSRQNNFG GLWDNVAIRG
LPGNENTGSA TLLNGFSGNR GFNAPRDMAG VERIEFLKGP AAALYGSSEP GGTLNIVTKR
PKWKPANAVE AYAGSHGYRR GALDSTGPLG ENLAYRLNVA VEDRDSFRDF VSAQRQVVAP
AFTWKLGGST VLDYSGEYLR HRAPLDRGVV AVGNRLGDVP RSRFLGEPGD GDVTVRNTTH
QLSLLHEWNA QWRSRFALSY RTTGLDGFSS EASSLLADGT LRRQRRLRDF SSDDTALQGE
LIGNLQWGDT PHELLLGVET YRYTLDARML RINPTAAAPY AIDIHQPVYG QPRPAPGPNT
DFTERQRNTA LYVQDAIQLA PQWRVLAGAR FDRYRQTYDN HRTGTTDGQD PTAVSPRVGV
SWLPHAQWTV YANAGTSFRP NSGFTSAVGR SGLALDPEKG RALEVGVKWE SADQRLGATA
ALFDITKRNM LTTDPVDSSF QVTAGKVRSR GLEFDLAGQL SSHWRLNASL VLNDVDVLRD
NTLEIGSRLI NVPRVNGSLL AVYEDALASG QRYGVGGGVT HVGRRLGAAR TQAEAQAGTP
AFELPAYTTA KIVAYWRLTP AVRLTLDVDN VFDKTYYATS VSRLWVTPGS GRTVAVGLQA
RF
|
|---|
| |