| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3641 |
|---|
| Symbol | ubiB |
|---|
| ID | 4668941 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 4014542 |
|---|
| End bp | 4016110 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 639824832 |
|---|
| Product | putative ubiquinone biosynthesis protein UbiB |
|---|
| Protein accession | YP_971964 |
|---|
| Protein GI | 120612286 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0661] Predicted unusual protein kinase |
|---|
| TIGRFAM ID | [TIGR01982] 2-polyprenylphenol 6-hydroxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.302348 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCC TTTTCCGCGG CGCCACCATC GTCTGGGTGG TGCTGCGCTA TGGACTGGAT
GAGCTGGTAC TGACGAGCTT CCAGAAGCCG TGGCTGCGGC TGCTGGCACG CATCGTCTCC
TTCGGCCGCA AGCTGGACGC GCCGCGCGGA CAGCGCCTGC GCGAGGCCCT GGAGCGGCTG
GGGCCCATCT TCGTGAAGTT CGGGCAGGTG CTGTCCACGC GGCGCGACCT GCTGCCGCCG
GACATCGCCA ACGAACTGGC GCTGCTGCAG GACCGCGTTC CGCCCTTCGA CCCGGACGTG
GCCGTGGCCA CCATCGAACG CGCCTTCCGC CGGCCGGTGG GCGAGGTGTT CGTCTCGTTC
GAGCGCGTGC CGGTGGCGAG CGCATCCATC GCGCAGGTGC ATTTCGCCAT CGTGCGCGAC
CGCCACGGCG TGGAGCGCGA GGTGGCCGTG AAGGTGCTGC GGCCCGGCAT GCTGCCCGTG
ATCGACAACG ACCTGGGCCT CATGCGCGCC ATGGCCGGCT GGGTGGAGAG CCTGTCGGCC
GACGGCAAGC GCCTGAAGCC GCGGCAGGTG GTGGCGGAGT TCGACAACTA CCTGCACGAC
GAGCTGGACC TGATCCGCGA GGCCGCCAAT GCCGCGCAGC TGCGCCGCAA CATGGAGAGA
CTGGGCCTGG TGCGCATCCC GGAGATCCTC TGGGACTTCT GCCACCCGGA AGTGCTGGTG
ATGGAGCGCA TGAAGGGCGT GCCGATCAGC CAGATCGAGC GGCTGCGCGC GGCCGGGGTG
GACATCCGCC AGCTGGCGCG CGACGGCGTC ACCATCTTCT TCACCCAGGT CTTCCGCGAC
GGCTTCTTCC ACGCGGACAT GCACCCGGGC AACATCCAGG TGAGCCTGGA GCCGGGTTCG
TTCGGCCGCT ACATCTCGCT GGATTTCGGC ATCGTCGGCT CGCTCACCGA GTTCGACAAG
GAATACCTCG CCCAGAACTT CACCGCCTTC TTCCGCCGCG ACTACAAGCG CGTGGCGGAG
CTGCACGTGG AGAGCGGCTG GGTGCCGGCC GACACGCGCA TCAACGAACT GGAGTCGGCC
ATCCGCGCCG TCTGCGAGCC GTACTTCGAC CGCCCGCTCA AGGAGATCTC GCTCGGCATG
GTGCTGATGC GGCTGTTCCA GACCTCGCGG CGCTTCCACG TGGAGATCCA GCCGCAGCTC
GTGCTGCTGC AGAAGACGCT GCTCAACATC GAAGGCCTGG GCCGCCAGCT CGACCCGGAA
CTGGACCTCT GGAGCACAGC CAAGCCGTTC CTGGAAAAGT GGATGCTCGA CCAGATGGGG
CCGCAGCGGC TCTGGCGCGA AGTGAAGGCC GAGTCGCCGC ATTTCGCGAA GATGCTGCCT
GAGCTGCCGC GCCTGCTGCA CGACTACCTG CACCACAAGC CGCACGATCA CCGGCGCGAG
ATGCAGGAAC TGCTCGCCGA GCAGCGCCGC ACCAACCGGC TCCTGCAGAG CATCATCTAC
GGTGGCATGG GTTTTGTATT GGGACTGCTG GCGCTGCAGT TCCTGATCCG CATCCGGTTC
TTCCACTAA
|
|---|
| Protein sequence | MSRLFRGATI VWVVLRYGLD ELVLTSFQKP WLRLLARIVS FGRKLDAPRG QRLREALERL
GPIFVKFGQV LSTRRDLLPP DIANELALLQ DRVPPFDPDV AVATIERAFR RPVGEVFVSF
ERVPVASASI AQVHFAIVRD RHGVEREVAV KVLRPGMLPV IDNDLGLMRA MAGWVESLSA
DGKRLKPRQV VAEFDNYLHD ELDLIREAAN AAQLRRNMER LGLVRIPEIL WDFCHPEVLV
MERMKGVPIS QIERLRAAGV DIRQLARDGV TIFFTQVFRD GFFHADMHPG NIQVSLEPGS
FGRYISLDFG IVGSLTEFDK EYLAQNFTAF FRRDYKRVAE LHVESGWVPA DTRINELESA
IRAVCEPYFD RPLKEISLGM VLMRLFQTSR RFHVEIQPQL VLLQKTLLNI EGLGRQLDPE
LDLWSTAKPF LEKWMLDQMG PQRLWREVKA ESPHFAKMLP ELPRLLHDYL HHKPHDHRRE
MQELLAEQRR TNRLLQSIIY GGMGFVLGLL ALQFLIRIRF FH
|
|---|
| |