Gene Aave_3558 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_3558 
Symbol 
ID4669197 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand- 
Start bp3932036 
End bp3932659 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content68% 
IMG OID639824749 
Producthypothetical protein 
Protein accessionYP_971883 
Protein GI120612205 
COG category[S] Function unknown 
COG ID[COG3652] Predicted outer membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0580723 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.864917 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCAAC GCTATCTGCT GATCCCCGCC ACCATCGCTT TCGCCTGCGC CCTGCATGCC 
ACGGGCACGC AGGCGCAGAC CGCCCCTACG CAGACGCAGC CCGGCGCGGG CGCCGCACGC 
TCGGTGGACG GAGCGGAGGG CCAGGCGTCG CGCCTGACAC GCGCCGAGAA GTCCTTCCTG 
GACGATGCCG CCCACAACGG CCATGCGGAA GTCAAGAGCA GCCAGCTGGC CCTGCAGAAG 
GCCCAGAACC CGAAGGTGCG TTCGTTCGCC CAGCAGATGG TGGACGACCA TACCAAGGCC 
AACCAGGAAC TGGCCGCGCT GGCGTCCGGA AAGAACGCGC GTGTGCCCGA CGGCCCGTCG 
CTGATGCAGG AAGGCAAGCT CAAGCTGCTG GGCACCGCCG ACGGCGCGGA CTTCGACAAG 
CGCTACATGG AAACCATGGG CCTGCAGGCG CACCGGGACA CGATCGAGCT TTTCGAAAAG 
GGCGCCCGCG ATGCGCGCGA CCCGGAGGTG AAGGCTTTCG CGCAGAAGAC CCTGCCGAAG 
CTGAAGCAGC ATCTGGAGAT GGCGCAGCAG CTGGCCCAGG AAGTGGGCGT GAGCGCGGAC 
AAGGCCGCGG CCAGCGGCAA GTGA
 
Protein sequence
MNQRYLLIPA TIAFACALHA TGTQAQTAPT QTQPGAGAAR SVDGAEGQAS RLTRAEKSFL 
DDAAHNGHAE VKSSQLALQK AQNPKVRSFA QQMVDDHTKA NQELAALASG KNARVPDGPS 
LMQEGKLKLL GTADGADFDK RYMETMGLQA HRDTIELFEK GARDARDPEV KAFAQKTLPK 
LKQHLEMAQQ LAQEVGVSAD KAAASGK