| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3404 |
|---|
| Symbol | |
|---|
| ID | 4667867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 3760503 |
|---|
| End bp | 3761309 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639824600 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_971735 |
|---|
| Protein GI | 120612057 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1729] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR02795] tol-pal system protein YbgF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.535167 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAACC CCACCGTGCA GCAGCGGACG CGTGAGCGCG TCCGCAAGGC GGCGGCGCTC
GCCGCGCTGT CGCTGGCGGC CGGCTTCGGT GCCACGGCCA GCCATGCCGC GCTCTTCGAG
GACGAAGAGG CCCGCCGCGC CATCCTCGAA TTGCGCCAGC GCGTCGATGC GCTCCAGCAG
CAATTGGGCG GCGACCAGCG CCGCAGCTCG GACGAGACGT CCCAGATGCG CCGCAGCCTC
ATCGACCTGC AATCGCAGAT CGAAACCCTG CGTTCGGAGC AGGCCAGCCT GCGCGGCCAG
AACGAGCAGC TGCAGCGCGA CGTGGCCGAC CTGCAGCGCC GGCAGAAGGA CATCGCCCAG
GGCGTGGACG AACGCCTCAA GCAGTTCGAG CCGGCCAAGG TGACCATGGA CGGCCAGGAA
TTCCAGGCCG ACCCCGCGGA AAAGCGCGAC TTCGAAGCCG CGCTGGCCGT GTTCCGTTCG
GGCAAATTCC CCGATGCCGT GTCCGCCTTC GGCAACTTCC TGCGCCAGTA TCCCCGCAGC
GGCTACGTGC CCTCGGCCCG GTTCTGGCTG GGCAACGCCC AGTACGCCAC GCGCGACTAC
AAGGAAGCGA TCAACAACTT CAAGGCCCTG CTGGCCGCGT CGCCCGACCA TGCGCGCGCG
CCGGAAGCGG CCCTGTCGAT CGCCAACTGC CAGATCGAGC TGAAGGACAC GCGCGCCGCG
CGCAAGACGC TGGAAGACCT GCTGCGAGCC TATCCGCAGT CCGAAGCCGC TGCCGCGGCC
AAGGAACGCC TCGCGCGGCT GAAGTGA
|
|---|
| Protein sequence | MANPTVQQRT RERVRKAAAL AALSLAAGFG ATASHAALFE DEEARRAILE LRQRVDALQQ
QLGGDQRRSS DETSQMRRSL IDLQSQIETL RSEQASLRGQ NEQLQRDVAD LQRRQKDIAQ
GVDERLKQFE PAKVTMDGQE FQADPAEKRD FEAALAVFRS GKFPDAVSAF GNFLRQYPRS
GYVPSARFWL GNAQYATRDY KEAINNFKAL LAASPDHARA PEAALSIANC QIELKDTRAA
RKTLEDLLRA YPQSEAAAAA KERLARLK
|
|---|
| |