| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Aave_3174 |
|---|
| Symbol | |
|---|
| ID | 4666484 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Acidovorax citrulli AAC00-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008752 |
|---|
| Strand | - |
|---|
| Start bp | 3502126 |
|---|
| End bp | 3503325 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 639824374 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_971511 |
|---|
| Protein GI | 120611833 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0541097 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.740982 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCATTCC TCCCGTCCCG CGAGCACCGT TCCTCCACAT CCGCCGCCCT CTGCGCGGCC
GTCGCCCTGC TGGCCGGTGG CGCCCAGGCC GCGGACAAGG TCAAGGTCGG CCTGCTGACC
ACGCTGTCGG GCCCCGGGTC GGGCCTCGGG ATCGACATCC GCGATGGCTT CCAGCTCGCG
GTGAAGCAGG GCGCGGGCAG GCTCGGCGGC CTGCCGGCCG AAGTGACCGT GGCGGACGAC
CAGCAGAGCC CCGACGCGGC CAAGCAGACG GCCGACCGGC TGGTCAAGCG CGAGCGCGTG
GATTTCATGA CCGGCATCGT GTTCTCCAAC GTGATGCTGG CCGTCGGGCA GCCGGTGTTC
CAGTCGCGCA CCTTCTACAT CAGCGCCAAC GCCGGGCCGT CGCAGTACGC GGGCGCGCAA
TGCAACCCGT ACTTCTTCAG CGCTTCCTAC CAGAACGACA ACATGCACGA GGCCGTGGGC
AAGACCGTGC AGGACCGCGG CTTCAAGAAG GTGGCGCTGC TCGCGCCCAA CTATCCGGCG
GGCAAGGACG CGCTGGCCGG CTTCAAGCGT TTCTACAAGG GCGAGGTGGT CATGGAGGCC
TACACGCCGC TGAGCCAGCT CGACTACGGC GCGGAGCTGT CCAAGATCCG CGCCTCGGGC
GCCGACGCGG TCTTCGTGTT CCTGCCGGGC GGCCTGGGCG TGAACTTCGT CAAGCAGTTC
ACCGGTGCCG GCCTGGGCAA GGAGATGAAG CTCTTCGCCC CGGGCTTCTC GGCCGACGAG
GACGTGATCC GCGCGGTGGG CGATGCCATG GTGGGCATCT TCAACAGCTC GCAGTGGGCC
CACGACATGG ACAACGCCGC CAACAAGCGC TTCGTGGCCG ACTTCCAGAA GGAATACGGC
CGCCTGCCGA CGCTGTACGC GGCGCAGGGC TACGACGCGG CCCGGCTCAT CGACGGCGCC
GTGCGCCGCG TGGGCGGCAA GCTGGAGGAC AAGGCCGCGC TGCGCAAGGC GCTGGAGGCC
GCGCCGTTCG AGTCCGTGCG CGGGCCGTTC CGCTTCAACA CCAACCACTA CCCGGTGCAG
GACTACTACC TGCGCGAAGT GGTGAAGGAC GCGCAGGGCC GCATCACCAA CAAGACCGTC
GGCCGCGTGT TCGAGGCGCA TGCCGATGCC TACGCCGGCG AATGCCGCAT GCCCTCCTGA
|
|---|
| Protein sequence | MPFLPSREHR SSTSAALCAA VALLAGGAQA ADKVKVGLLT TLSGPGSGLG IDIRDGFQLA
VKQGAGRLGG LPAEVTVADD QQSPDAAKQT ADRLVKRERV DFMTGIVFSN VMLAVGQPVF
QSRTFYISAN AGPSQYAGAQ CNPYFFSASY QNDNMHEAVG KTVQDRGFKK VALLAPNYPA
GKDALAGFKR FYKGEVVMEA YTPLSQLDYG AELSKIRASG ADAVFVFLPG GLGVNFVKQF
TGAGLGKEMK LFAPGFSADE DVIRAVGDAM VGIFNSSQWA HDMDNAANKR FVADFQKEYG
RLPTLYAAQG YDAARLIDGA VRRVGGKLED KAALRKALEA APFESVRGPF RFNTNHYPVQ
DYYLREVVKD AQGRITNKTV GRVFEAHADA YAGECRMPS
|
|---|
| |