Gene Aave_3048 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAave_3048 
Symbol 
ID4669010 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAcidovorax citrulli AAC00-1 
KingdomBacteria 
Replicon accessionNC_008752 
Strand
Start bp3357410 
End bp3359317 
Gene Length1908 bp 
Protein Length635 aa 
Translation table11 
GC content76% 
IMG OID639824250 
Producthypothetical protein 
Protein accessionYP_971389 
Protein GI120611711 
COG category[E] Amino acid transport and metabolism
[S] Function unknown 
COG ID[COG0665] Glycine/D-amino acid oxidases (deaminating)
[COG4121] Uncharacterized conserved protein 
TIGRFAM ID[TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.115559 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0258128 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGAAC CCATCGACTG GCTCCCCGAC GGCACCCCGT TCAATCCGCG CTTCGGCGAC 
CGCTACCACA GCCACACCGG GCTCGCGCAG GCACGCGAAG TCTTCCTGCG CGGCTGCGGC
CTGCCCGGGG CGTGGGCCGG CCAGGCGATG TGGCGGGTGC TGGAGACCGG CTTCGGCTGC
GGGCTGAATT TCCTCGCCAC CTGGGCCGCC TGGCGGGCCG ACCCGGCGCG GCCCCGGCTG
CTGCATTTCG TGTCCTGCGA AGCGTTTCCC GTCTCAGCGG ACGACCTGCT GCGCTCCATG
CAGGGGCATG GCGAGCTGGA ACCCCTGGCC CGCGCGCTGC ATGCGCAGTA CTGGGGCCTG
CTGCCCGGCG TGCACCGGCT CGCCTTCGAG GGCGGGCAGG TGCTGCTCAC GCTCTACATC
GGCGACGCGC AGGCGATGCT GCGCCAGCAG CAGCCGGTGG CCGATGCGGT GTACCTGGAC
GGCTTCAGCC CGCAGGTGAA CCCGGAGCTG TGGGACGTGC ACACGCTCAA GGCCGTGGCG
CGCTGCTGCC GCCGCGGCAC GCGCCTGGCC ACCTGGAGCG TGGCCGGCGC GGTGCGCGAA
GGGCTCGCGC AGTGCGGTTT CCGGGTGCAG AAGGTGCCCG GCCTGCCCCC GAAGCGCAGC
AACCTGCAGG CGGAGTTCGA TCCGGCCTGG GAGCCGCGCC CCGTGCAGCC GGAGCTGCCC
GACGTGCGCG TGGCGGGCGG ACCGTCGAGC GTGCTGGTCA TCGGCGGAGG GCTGTCGGGC
GCCGCCGTGG CGGCGAGCCT CGCGCGGCGC GGCTGGCAGG TGCGGGTGCT GGACCAGGGC
GCGGAACCCG CGGCCGGCGC CTCGGGCCTG CCGGCCGGCG TGTTCGCGCC GCATGTGTCG
CCCGACGACA GCCTGCTCTC GCGCCTGTCG CGCTGCGGCG TGCGGGCCAC GCTGCAGGCC
CTGGAGGCAT CCGGCCTGTC GGAAGGCGAG GACTGGAGCG CCTGCGGCGT GCTGGAGCAC
GAGGTGGATG GCAAGCACCG CCTGCCGCCT GCCTGGGCCG GGGATGCCGC GGTGGGCGCC
GAATGGAGCC GCCCCGCCGA TGCCGCGGCG CTGGAGGCCG CTGGCCTGCC CGGAGCCACC
GTCGCCTATT GGCATGCGCG TGGCGGATGG CTGCGGCCGG CCCGGCTGGT GCGCGCGCTG
CTGGCGCACC CTGGCATCCA CTGGCAGGGC CGCAGTGCCG TGGCACGGCT GGAGCCCGTG
GCCGCTCCCG GTGGCGCCAC GCACTGGCAG GCATATGGCA GCGACGGCAC GGTGCTCGCC
GAAGCGCCCC ACGTGGTGGT GGCCGCTGGC TACGGCAGCC GCCCCTGGCT ACCCGCCCGC
TACCCGATCC ATCCGCTGCG CGGCCAGGTG AGCTGGGGCA CGCGGGCGGA CAGCCCGGCC
GCCGCCTGGC CGCCCTTCCC CGTCAACGGC CATGGCAACC TCGTGCCGCA TGCGGGCACG
GCGGGGGGAG GCATCTGGGT GATGGGCTCG ACCTTCGAGC GCGGCCAGAC GGAACTGCCC
CCCGCGCCCC AGGAACAGGC GCAGGCCCAT GCGGCCAATG CCGCGAAGCT GGAACAACTG
CTGCCGGCGC TGGCGCAGGG GCTCGCACCC GCCATCGCCG GCCCGGGCGC CGCCCCCGGC
CACTGGGCGG CCGTGCGCTG CACCGCGCCC GACCGGCTGC CTTTCGTGGG GCCGGTGGAT
GCCGCACGGC AGGCCGGGCT CTGGGTCTGC GCCGCGATGG GCGCGCGCGG GCTCACGCTG
TCGCAGCTGT GCGGGGAACT GCTGGCCGCC CGCATGATGG GCGAGCCGCT GCCTGTGGAG
GTGCGTCTGG CGCGGGCGCT GTCCACCGAG CGGCTTCCTG CGGACTGA
 
Protein sequence
MSEPIDWLPD GTPFNPRFGD RYHSHTGLAQ AREVFLRGCG LPGAWAGQAM WRVLETGFGC 
GLNFLATWAA WRADPARPRL LHFVSCEAFP VSADDLLRSM QGHGELEPLA RALHAQYWGL
LPGVHRLAFE GGQVLLTLYI GDAQAMLRQQ QPVADAVYLD GFSPQVNPEL WDVHTLKAVA
RCCRRGTRLA TWSVAGAVRE GLAQCGFRVQ KVPGLPPKRS NLQAEFDPAW EPRPVQPELP
DVRVAGGPSS VLVIGGGLSG AAVAASLARR GWQVRVLDQG AEPAAGASGL PAGVFAPHVS
PDDSLLSRLS RCGVRATLQA LEASGLSEGE DWSACGVLEH EVDGKHRLPP AWAGDAAVGA
EWSRPADAAA LEAAGLPGAT VAYWHARGGW LRPARLVRAL LAHPGIHWQG RSAVARLEPV
AAPGGATHWQ AYGSDGTVLA EAPHVVVAAG YGSRPWLPAR YPIHPLRGQV SWGTRADSPA
AAWPPFPVNG HGNLVPHAGT AGGGIWVMGS TFERGQTELP PAPQEQAQAH AANAAKLEQL
LPALAQGLAP AIAGPGAAPG HWAAVRCTAP DRLPFVGPVD AARQAGLWVC AAMGARGLTL
SQLCGELLAA RMMGEPLPVE VRLARALSTE RLPAD