Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Aave_2984 |
Symbol | |
ID | 4669002 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Acidovorax citrulli AAC00-1 |
Kingdom | Bacteria |
Replicon accession | NC_008752 |
Strand | + |
Start bp | 3277378 |
End bp | 3279201 |
Gene Length | 1824 bp |
Protein Length | 607 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 639824184 |
Product | malto-oligosyltrehalose trehalohydrolase |
Protein accession | YP_971325 |
Protein GI | 120611647 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.340631 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00906327 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGAAGCACC AGCACGACAT GCCGATCGGC GCCCGCCTCC TTCCTGAAGG CGGCGTCCAC TTCACCCTCT GGGCCCCCGC CGCCTCGCGG CTCACCCTCC ACCACCGCCG CGCACCGGGC GCGGAGCCCG CGCAGGTTCC GGGCCGCCGG GATGCGGACG GTTTCTGGCA GGCCACCGTG CCGGAGGCCG GCCCGGACAC GCTCTATCAA TGGCAGGCGG ACAATGGTCC CCTGGTGCCC GATCCGGCAT CGCGCAGCAA TCCCGACGGT CCGCACGGCC CGAGCCGCGT GACCGATCCG GCCGCCTTCG ACTGGACGGT CGAGGGCTGG ACAGGCCGGC CGTGGAGCGA CACCGTGCTC TACGAACTGC ACGTGGGTAC CTTCACGCCC GAGGGTACGT TCGCCGCGGC CATGCAGCGC CTGCCCTGGC TGGCCGAACA GGGCTTCACC GCCATCGAGC TCATGCCCGT GGCCACCTTC GGCGGGCGCC ACGGCTGGGG CTACGACGGC GTTCTGCCGT TCGCGCCGCA CCCGGCCTAC GGCACGCCGG ACGACATGAA GCGCTTCATC GACCGGGCCC ATGCGCTCGG CCTGATGGTG TTCCTGGACG TCGTGTACAA CCACTTCGGC CCGGACGGCA ACTACCTGGG CAGCTACGCC CCGGCCTTCT TCTCGGAAAC CCACCACAGC CCCTGGGGCG CGGCCATCAA TTTCGACGGC AAGGACAGCG GGCCGGTGCG CGAGTTCTTC ATCCAGAACG CGCTCTACTG GGTGCGAGAA TTCCGCATCG ACGGCCTGCG CCTGGATGCC GTCCATGCCA TCGTGGACGA CGGATCGCCC CACGTGCTCG AAGACCTCGC GCAGCGCGTG CGGCAGGCCA CCGAGGGCCG GCACGTCCAC CTCGTCCTGG AAAACGAGAA GAACGAGAGC CAGCGCCTGG CCCCCCGGCC CGAGCCCACG CGCTACGACG CGCAGTGGAA CGACGACTTC CACCATGCCC TGCATGTCGC CCTCACGGGA GAGCGCCAGG GCTACTACGC CGACTACGCG CATGCGCCGC TGGACGGGCT CGCGCATAGC TTCGCGGGCG GCTATGTGTT CGCGCCCTCG CACCGCGACG GCGATGGCCG GCGCCTGGAA CGGGCACCCG CCGCGCCCCA GCCCCTGGCC ACGATGGTGA ACTTCTGCGG CAACCACGAC CAGATCGGCA ACCGCGCTTT CGGCGAGCGG CTCTCGCACC TGGTGCCGCA GCCCGCGGCC GAACTCGCAC TGCTGTCCGC GCTGCTCACG CCCGCCACGC CGCTGGTGTT CATGGGCGAC GAATTCGGCG CGGAAACACC TTTCCTGTAT TTCGCCGACT GGACGGGCGA GCTCCGCGAG GCGGTTCGCC AGGGACGCCA GCGCGAATTC CGGCTCGAAG CCGGCTCGGG CCGCGAATTG CCCGACCCCT GCGACGCCGC CACCCTCGAA CGCAGCCGCC TCGACTGGCG CCAGGCGGAA GGCCCCGCCG GACAGGTGCG GCTCGCGCTG GTCCGCAACG CCCTGTCCGC ACGCCGGCAA TGGATCGCCC CGCGCCTGTC CCGGCTGCGC TCCGGCACGC ACACGGCGCG CCGCGTGGGA GCGACCGGGC TGCAGGTGGA ATGGGACTAC GACGATGGAA CACGCCTCGT GATGCAAATG AACCTGGGCA AAGACTCCGT CACGCCGCAG ACCCCTGAGG CGGCCGCCGA GCCTGGCCTG CGGGTCTTCC AGCACCGCTG GGAAGGCGGT GGCGCCTGGG CCCCTTGGTC CGCGCGGTGG ACGCTGCAGG GGGTACCGGC ATGA
|
Protein sequence | MKHQHDMPIG ARLLPEGGVH FTLWAPAASR LTLHHRRAPG AEPAQVPGRR DADGFWQATV PEAGPDTLYQ WQADNGPLVP DPASRSNPDG PHGPSRVTDP AAFDWTVEGW TGRPWSDTVL YELHVGTFTP EGTFAAAMQR LPWLAEQGFT AIELMPVATF GGRHGWGYDG VLPFAPHPAY GTPDDMKRFI DRAHALGLMV FLDVVYNHFG PDGNYLGSYA PAFFSETHHS PWGAAINFDG KDSGPVREFF IQNALYWVRE FRIDGLRLDA VHAIVDDGSP HVLEDLAQRV RQATEGRHVH LVLENEKNES QRLAPRPEPT RYDAQWNDDF HHALHVALTG ERQGYYADYA HAPLDGLAHS FAGGYVFAPS HRDGDGRRLE RAPAAPQPLA TMVNFCGNHD QIGNRAFGER LSHLVPQPAA ELALLSALLT PATPLVFMGD EFGAETPFLY FADWTGELRE AVRQGRQREF RLEAGSGREL PDPCDAATLE RSRLDWRQAE GPAGQVRLAL VRNALSARRQ WIAPRLSRLR SGTHTARRVG ATGLQVEWDY DDGTRLVMQM NLGKDSVTPQ TPEAAAEPGL RVFQHRWEGG GAWAPWSARW TLQGVPA
|
| |